Evidence map›Paper›PMID 19346337›Full record

ArticleNucleic acids research2009

Poly(ADP-ribosyl)ation of heterogeneous nuclear ribonucleoproteins modulates splicing.

Yingbiao Ji, Alexei V Tulin

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. From development to disease: the neuronal role of hnRNPs through the lens ofFrontiers in cell and developmental biology · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Multiomics analysis of the NADGenes & development · 2022
    Article
  10. Article
  11. Functional roles of ADP-ribosylation writers, readers and erasers.Frontiers in cell and developmental biology · 2022
    Review
  12. The multifaceted role of PARP1 in RNA biogenesis.Wiley interdisciplinary reviews. RNA · 2021
    Review
  13. PARP1 Hinders Histone H2B Occupancy at the NFATc1 Promoter to Restrain Osteoclast Differentiation.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2020
    Article
  14. Review
  15. Nuclear PARPs and genome integrity.Genes & development · 2020
    Review
  16. Review
  17. Review
  18. Novel insights into PARPs in gene expression: regulation of RNA metabolism.Cellular and molecular life sciences : CMLS · 2019
    Review
  19. Over-expression of Hsp83 in grossly depletedJournal of biosciences · 2019
    Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Yingbiao JiFox Chase Cancer Center, Philadelphia, PA 19111, USA.
Alexei V Tulin
Fox Chase Cancer Center · US

Funding

Poly ADP-ribose Polymerase in Chromatin and Transcriptional RegulationR01GM077452 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI TULIN, ALEXEI V · 2008 to 2012
$1.6M
NORMAL AND MUTANT CHORION GENES OF DROSOPHILAR37GM027875 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI SPRADLING, ALLAN C · 1993 to 2003
$661k
NORMAL AND MUTANT CHORION GENES OF DROSPHILAR01GM027875 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, DC · PI SPRADLING, ALLAN C · 1985 to 1992
–
NIGMS NIH HHS GM27875NIGMS NIH HHS R01 GM077452
6 · The paper itself

Abstract

The biological functions of poly(ADP-ribosyl)ation of heterogeneous nuclear ribonucleoproteins (hnRNPs) are not well understood. However, it is known that hnRNPs are involved in the regulation of alternative splicing for many genes, including the Ddc gene in Drosophila. Therefore, we first confirmed that poly(ADP-ribose) (pADPr) interacts with two Drosophila hnRNPs, Squid/hrp40 and Hrb98DE/hrp38, and that this function is regulated by Poly(ADP-ribose) Polymerase 1 (PARP1) and Poly(ADP-ribose) Glycohydrolase (PARG) in vivo. These findings then provided a basis for analyzing the role of pADPr binding to these two hnRNPs in terms of alternative splicing regulation. Our results showed that Parg null mutation does cause poly(ADP-ribosyl)ation of Squid and hrp38 protein, as well as their dissociation from active chromatin. Our data also indicated that pADPr binding to hnRNPs inhibits the RNA-binding ability of hnRNPs. Following that, we demonstrated that poly(ADP-ribosyl)ation of Squid and hrp38 proteins inhibits splicing of the intron in the Hsr omega-RC transcript, but enhances splicing of the intron in the Ddc pre-mRNA. Taken together, these findings suggest that poly(ADP-ribosyl)ation regulates the interaction between hnRNPs and RNA and thus modulates the splicing pathways.

Indexed as

Alternative SplicingAmino Acid SequenceAnimalsBinding SitesCell NucleusChromatinDrosophilaDrosophila ProteinsGene Knockout TechniquesGlycoside HydrolasesHeat-Shock ResponseHeterogeneous-Nuclear RibonucleoproteinsMolecular Sequence DataPoly Adenosine Diphosphate RibosePoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesChromatinDrosophila ProteinsGlycoside HydrolasesHeterogeneous-Nuclear RibonucleoproteinsHRB98DE protein, DrosophilaParp protein, DrosophilaPoly Adenosine Diphosphate Ribosepoly ADP-ribose glycohydrolasePoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesRibonucleoproteinsRNA-Binding Proteinssqd protein, Drosophila

Identifiers

PMID19346337
PMCPMC2699505
OpenAlexW2102435095

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.