Evidence map›Paper›PMID 19344874›Full record

ArticleAmerican journal of human genetics2009

Oligodontia is caused by mutation in LTBP3, the gene encoding latent TGF-beta binding protein 3.

Abdul Noor, Christian Windpassinger, Irina Vitcu, Marija Orlic, Muhammad Arshad Rafiq, Mahwish Khalid, Mahmood Nasir Malik, Muhammad Ayub, Benjamin Alman, John B Vincent

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 94 citations in OpenAlex.

  1. Genetic background of nonsyndromic oligodontia: a systematic review and meta-analysis.Journal of orofacial orthopedics = Fortschritte der Kieferorthopadie : Organ/official journal Deutsche Gesellschaft fur Kieferorthopadie · 2013
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Multi-organ phenotypes in mice lacking latent TGFβ binding protein 2 (LTBP2).Developmental dynamics : an official publication of the American Association of Anatomists · 2024
    Review
  6. Article
  7. Frontiers in physiology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Genes · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Abdul NoorNeuropsychiatry and Development Lab, Neurogenetics Section, Centre for Addiction and Mental Health, Toronto, ON M5T 1R8, Canada.
Christian Windpassinger
Irina Vitcu
Marija Orlic
Muhammad Arshad Rafiq
Mahwish Khalid
Mahmood Nasir Malik
Muhammad Ayub
Benjamin Alman
John B Vincent
Centre for Addiction and Mental Health · CAHospital for Sick Children · CAJinnah Postgraduate Medical Center · PKSt. Luke's Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have identified a consanguineous Pakistani family where oligodontia is inherited along with short stature in an autosomal-recessive fashion. Increased bone density was present in the spine and at the base of the skull. Using high-density single-nucleotide polymorphism microarrays for homozygosity mapping, we identified a 28 Mb homozygous stretch shared between affected individuals on chromosome 11q13. Screening selected candidate genes within this region, we identified a homozygous nonsense mutation, Y774X, within LTBP3, the gene for the latent TGF-beta binding protein 3, an extracellular matrix protein believed to be required for osteoclast function.

Indexed as

Codon, NonsenseAnodontiaBase SequenceBody HeightBone DensityBone DevelopmentChromosomes, Human, Pair 11ConsanguinityDNA PrimersFemaleHeterozygoteHomozygoteHumansLatent TGF-beta Binding ProteinsMaleOligonucleotide Array Sequence AnalysisCodon, NonsenseDNA PrimersLatent TGF-beta Binding ProteinsLTBP3 protein, humanRNA, Messenger

Identifiers

PMID19344874
PMCPMC2667979
OpenAlexW2088711847

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.