ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009
Population structure and linkage disequilibrium in barley assessed by DArT markers.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
22 citing papers in PubMed.
- CGIAR Barley Breeding Toolbox: A diversity panel to facilitate breeding and genomic research in the developing world.Frontiers in plant science · 2022Article
- Genome-Wide Association Study of Waterlogging Tolerance in Barley (Frontiers in plant science · 2021Article
- GWAS analysis in spring barley (Hordeum vulgare L.) for morphological traits exposed to drought.PloS one · 2018Article
- Extent and overlap of segregation distortion regions in 12 barley crosses determined via a Pool-GBS approach.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Molecular Approaches to Understand Nutritional Potential of Coarse Cereals.Current genomics · 2016Article
- The genetic diversity of triticale genotypes involved in Polish breeding programs.SpringerPlus · 2016Article
- Development of DArT-based PCR markers for selecting drought-tolerant spring barley.Journal of applied genetics · 2015Article
- Genome-wide association studies of agronomic and quality traits in a set of German winter barley (Hordeum vulgare L.) cultivars using Diversity Arrays Technology (DArT).Journal of applied genetics · 2014Article
- Analysis of diversity and linkage disequilibrium mapping of agronomic traits on B-genome of wheat.Journal of genomics · 2014Article
- Genome-wide association mapping for kernel and malting quality traits using historical European barley records.PloS one · 2014Article
- Association mapping of salt tolerance in barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Haplotype diversity and population structure in cultivated and wild barley evaluated for Fusarium head blight responses.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- Genetic Diversity and Population Structure of Tetraploid Wheats (Triticum turgidum L.) Estimated by SSR, DArT and Pedigree Data.PloS one · 2013Article
- Genome-wide association mapping in tomato (Solanum lycopersicum) is possible using genome admixture of Solanum lycopersicum var. cerasiforme.G3 (Bethesda, Md.) · 2012Article
- Genetic structure and linkage disequilibrium in landrace populations of barley in Sardinia.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Genome-wide association studies for agronomical traits in a world wide spring barley collection.BMC plant biology · 2012Article
- Analysis of genetic structure in a panel of elite wheat varieties and relevance for association mapping.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Investigation of genetic diversity and population structure of common wheat cultivars in northern China using DArT markers.BMC genetics · 2011Article
- Population structure and linkage disequilibrium in oat (Avena sativa L.): implications for genome-wide association studies.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Allelic variation in the perennial ryegrass FLOWERING LOCUS T gene is associated with changes in flowering time across a range of populations.Plant physiology · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Diversity Array Technology (DArT) markers were used to investigate the genetic diversity, population structure, and extent of linkage disequilibrium (LD) on a genome-wide level in Canadian barley (Hordeum vulgare L.). Approximately 1,000 DArT markers were polymorphic and scored with high confidence among a collection of 170 barley lines composed mostly of Canadian cultivars and breeding lines. The reproducibility of DArT markers proved very high, as 99.9% of allele calls were identical among seven replicated samples. The polymorphism information content (PIC) of DArT markers ranged between 0.04 and 0.50 with an average of 0.38. Using principal coordinate analysis (PCoA), most lines fell into one of two major groups reflecting inflorescence type (two-row versus six-row). Within these two large groups, evidence of geographic clustering of genotypes was also observed. A cluster analysis Unweighted Pair Group Method with Algorithmic Mean suggested the existence of three subgroups within the two-row group and four subgroups within the six-row group. An analysis of molecular variance (AMOVA) revealed highly significant (P < 0.001) genetic variance within subgroups, among subgroups, and among groups. Values of LD, expressed as r (2), declined with increasing genetic distance, and mean values of r (2) fell below 0.2 for markers located 2.6 cM apart. Approximately 8% of marker pairs located on the same chromosome and 3.4% of pairs located on different chromosomes were in LD (r ( 2 ) > 0.2). Within both the subsets of two-row and six-row lines, LD extended slightly further (3.5 cM) than for the entire set, while 7.5% of intra-chromosomal locus pairs and <2% of inter-chromosomal pairs were in LD. We discuss the implications of these findings with regard to the prospects of association mapping of complex traits in barley.
Indexed as
Identifiers
19343317What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.