Evidence map›Paper›PMID 19339494›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers.

Patricia Arashiro, Iris Eisenberg, Alvin T Kho, Antonia M P Cerqueira, Marta Canovas, Helga C A Silva, Rita C M Pavanello, Sergio Verjovski-Almeida, Louis M Kunkel, Mayana Zatz

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Emerging preclinical animal models for FSHD.Trends in molecular medicine · 2015
    Review
  6. Article
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  8. Article
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  11. Transcriptional profiling in facioscapulohumeral muscular dystrophy to identify candidate biomarkers.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  12. Review
  13. Article
  14. Review
  15. Article
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  18. RNA interference improves myopathic phenotypes in mice over-expressing FSHD region gene 1 (FRG1).Molecular therapy : the journal of the American Society of Gene Therapy · 2011
    Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Patricia ArashiroHuman Genome Research Center, Department of Genetics and Evolutive Biology, Institute of Biosciences, University of São Paulo, 05508-090, São Paulo, Brazil.
Iris Eisenberg
Alvin T Kho
Antonia M P Cerqueira
Marta Canovas
Helga C A Silva
Rita C M Pavanello
Sergio Verjovski-Almeida
Louis M Kunkel
Mayana Zatz
Universidade de São Paulo · BRHoward Hughes Medical Institute · USHarvard University · US

Funding

Myogenesis Studies for FSHD BiomarkersU54HD060848 · NICHD · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI EMERSON, CHARLES P. · 2008 to 2017
$16.1M
A Developmental Basis for Chronic Obstructive Lung DiseaseK25HL091124 · NHLBI · BOSTON CHILDREN'S HOSPITAL · PI KHO, ALVIN THONG-JUAK · 2008 to 2012
$743k
Howard Hughes Medical InstituteNHLBI NIH HHS K25 HL091124NICHD NIH HHS 1U54HD060848-01NICHD NIH HHS U54 HD060848
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy (FSHD) is a progressive muscle disorder that has been associated with a contraction of 3.3-kb repeats on chromosome 4q35. FSHD is characterized by a wide clinical inter- and intrafamilial variability, ranging from wheelchair-bound patients to asymptomatic carriers. Our study is unique in comparing the gene expression profiles from related affected, asymptomatic carrier, and control individuals. Our results suggest that the expression of genes on chromosome 4q is altered in affected and asymptomatic individuals. Remarkably, the changes seen in asymptomatic samples are largely in products of genes encoding several chemokines, whereas the changes seen in affected samples are largely in genes governing the synthesis of GPI-linked proteins and histone acetylation. Besides this, the affected patient and related asymptomatic carrier share the 4qA161 haplotype. Thus, these polymorphisms by themselves do not explain the pathogenicity of the contracted allele. Interestingly, our results also suggest that the miRNAs might mediate the regulatory network in FSHD. Together, our results support the previous evidence that FSHD may be caused by transcriptional dysregulation of multiple genes, in cis and in trans, and suggest some factors potentially important for FSHD pathogenesis. The study of the gene expression profiles from asymptomatic carriers and related affected patients is a unique approach to try to enhance our understanding of the missing link between the contraction in D4Z4 repeats and muscle disease, while minimizing the effects of differences resulting from genetic background.

Indexed as

HeterozygoteCase-Control StudiesChromosomes, Human, Pair 4Gene Expression ProfilingGene Expression RegulationHumansMuscular Dystrophy, FacioscapulohumeralPolymorphism, GeneticTranscription, Genetic

Identifiers

PMID19339494
PMCPMC2664154
OpenAlexW2045647132

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.