ReviewCurrent opinion in structural biology2009
Hybrid approaches: applying computational methods in cryo-electron microscopy.
Review in Current opinion in structural biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
26 citing papers in PubMed.
- DNA deformability in sequence-dependent capture of E. coli gyrase.Nature communications · 2026Article
- LPTD: a novel linear programming-based topology determination method for cryo-EM maps.Bioinformatics (Oxford, England) · 2022Article
- EvoSeg: Automated Electron Microscopy Segmentation through Random Forests and Evolutionary Optimization.Biomimetics (Basel, Switzerland) · 2021Article
- [Progress in filters for denoising cryo-electron microscopy images].Beijing da xue xue bao. Yi xue ban = Journal of Peking University. Health sciences · 2021Article
- Using NMR Chemical Shifts and Cryo-EM Density Restraints in Iterative Rosetta-MD Protein Structure Refinement.Journal of chemical information and modeling · 2020Article
- Finding the needle in the haystack: towards solving the protein-folding problem computationally.Critical reviews in biochemistry and molecular biology · 2018Review
- Structural and mechanistic insights into human splicing factor SF3b complex derived using an integrated approach guided by the cryo-EM density maps.RNA biology · 2016Article
- Protein structure prediction guided by crosslinking restraints--A systematic evaluation of the impact of the crosslinking spacer length.Methods (San Diego, Calif.) · 2015Article
- Improved cryoEM-Guided Iterative Molecular Dynamics--Rosetta Protein Structure Refinement Protocol for High Precision Protein Structure Prediction.Journal of chemical theory and computation · 2015Article
- Case study on the evolution of hetero-oligomer interfaces based on the differences in paralogous proteins.Biophysics and physicobiology · 2015Article
- Modeling protein assemblies in the proteome.Molecular & cellular proteomics : MCP · 2014Article
- Computational methods for constructing protein structure models from 3D electron microscopy maps.Journal of structural biology · 2013Article
- Iterative Molecular Dynamics-Rosetta Protein Structure Refinement Protocol to Improve Model Quality.Journal of chemical theory and computation · 2013Article
- Ab initio protein modeling into CryoEM density maps using EM-Fold.Biopolymers · 2012Article
- Fitting multimeric protein complexes into electron microscopy maps using 3D Zernike descriptors.The journal of physical chemistry. B · 2012Article
- Conventions and workflows for using Situs.Acta crystallographica. Section D, Biological crystallography · 2012Article
- Consensus among flexible fitting approaches improves the interpretation of cryo-EM data.Journal of structural biology · 2012Article
- BCL::Score--knowledge based energy potentials for ranking protein models represented by idealized secondary structure elements.PloS one · 2012Article
- MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map.Nucleic acids research · 2011Article
- Exploring the spatial and temporal organization of a cell's proteome.Journal of structural biology · 2011Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Recent advances in cryo-electron microscopy have led to an increasing number of high (3-5A) to medium (5-10A) resolution cryoEM density maps. These density maps contain valuable information about the protein structure but frequently require computational algorithms to aid their structural interpretation. It is these hybrid approaches between cryoEM and computational protein structure prediction algorithms that will shape protein structure elucidation from density maps.
Indexed as
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.