Evidence map›Paper›PMID 19338674›Full record

ArticleMalaria journal2009

Expression of GIMAP1, a GTPase of the immunity-associated protein family, is not up-regulated in malaria.

Amy Saunders, Tracey Lamb, John Pascall, Amanda Hutchings, Carine Dion, Christine Carter, Lucy Hepburn, Jean Langhorne, Geoffrey W Butcher

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
  3. Gimap and T cells: a matter of life or death.European journal of immunology · 2014
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. GIMAP Proteins in T-Lymphocytes.Journal of signal transduction · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Amy SaundersThe Babraham Institute, Babraham Research Campus, Cambridge, UK. amy.saunders@bbsrc.ac.uk
Tracey Lamb
John Pascall
Amanda Hutchings
Carine Dion
Christine Carter
Lucy Hepburn
Jean Langhorne
Geoffrey W Butcher
Babraham Institute · GB

Funding

Biotechnology and Biological Sciences Research Council 202/GAN13085Medical Research Council MC_U117584248
6 · The paper itself

Abstract

backgroundGIMAP (GTPase of the immunity-associated protein family) proteins are a family of putative GTPases believed to be regulators of cell death in lymphomyeloid cells. GIMAP1 was the first reported member of this gene family, identified as a gene up-regulated at the RNA level in the spleens of mice infected with the malarial parasite, Plasmodium chabaudi.

methodsA monoclonal antibody against mouse GIMAP1 was developed and was used to analyse the expression of the endogenous protein in tissues of normal mice and in defined sub-populations of cells prepared from lymphoid tissues using flow cytometry. It was also used to assess the expression of GIMAP1 protein after infection and/or immunization of mice with P. chabaudi. Real-time PCR analysis was employed to measure the expression of GIMAP1 for comparison with the protein level analysis.

resultsGIMAP1 protein expression was detected in all lineages of lymphocytes (T, B, NK), in F4/80+ splenic macrophages and in some lymphoid cell lines. Additional evidence is presented suggesting that the strong expression by mature B cells of GIMAP1 and other GIMAP genes and proteins seen in mice may be a species-dependent characteristic. Unexpectedly, no increase was found in the expression of GIMAP1 in P. chabaudi infected mice at either the mRNA or protein level, and this remained so despite applying a number of variations to the protocol.

conclusionThe model of up-regulation of GIMAP1 in response to infection/immunization with P. chabaudi is not a robustly reproducible experimental system. The GIMAP1 protein is widely expressed in lymphoid cells, with an interesting increase in expression in the later stages of B cell development. Alternative approaches will be required to define the functional role of this GTPase in immune cells.

Indexed as

Up-RegulationAnimalsAntibodies, MonoclonalBlotting, WesternCell LineFlow CytometryGTP-Binding ProteinsGTP PhosphohydrolasesLymphocytesMalariaMaleMembrane ProteinsMiceMice, Inbred C57BLPlasmodium chabaudiPolymerase Chain ReactionAntibodies, MonoclonalGIMAP1 protein, humanGTP-Binding ProteinsGTP PhosphohydrolasesMembrane Proteins

Identifiers

PMID19338674
PMCPMC2669093
OpenAlexW2169984179

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.