Evidence map›Paper›PMID 19337729›Full record

ArticleImmunogenetics2009

Comparative genomics indicates the mammalian CD33rSiglec locus evolved by an ancient large-scale inverse duplication and suggests all Siglecs share a common ancestral region.

Huan Cao, Bernard de Bono, Katherine Belov, Emily S Wong, John Trowsdale, Alexander David Barrow

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Immunogenetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Siglecs in allergy and asthma.Molecular aspects of medicine · 2023
    Review
  6. Article
  7. Siglecs-7/9 function as inhibitory immune checkpoints in vivo and can be targeted to enhance therapeutic antitumor immunity.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Multifarious roles of sialic acids in immunity.Annals of the New York Academy of Sciences · 2012
    Review
  18. Article
  19. Siglecs and immune regulation.Annual review of immunology · 2012
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Huan CaoCambridge Institute for Medical Research, Wellcome Trust/MRC Building Addenbrooke's Hospital, Cambridge, UK. hc270@cam.ac.uk
Bernard de Bono
Katherine Belov
Emily S Wong
John Trowsdale
Alexander David Barrow
Wellcome Trust · GBUniversity of Sydney · AUWellcome/MRC Cambridge Stem Cell Institute · GB

Funding

Medical Research Council G0401569Medical Research Council G9800943
6 · The paper itself

Abstract

The CD33-related sialic acid binding Ig-like lectins (CD33rSiglecs) are predominantly inhibitory receptors expressed on leukocytes. They are distinguishable from conserved Siglecs, such as Sialoadhesin and MAG, by their rapid evolution. A comparison of the CD33rSiglec gene cluster in different mammalian species showed that it can be divided into subclusters, A and B. The two subclusters, inverted in relation to each other, each encode a set of CD33rSiglec genes arranged head-to-tail. Two regions of strong correspondence provided evidence for a large-scale inverse duplication, encompassing the framework CEACAM-18 (CE18) and ATPBD3 (ATB3) genes that seeded the mammalian CD33rSiglec cluster. Phylogenetic analysis was consistent with the predicted inversion. Rodents appear to have undergone wholesale loss of CD33rSiglec genes after the inverse duplication. In contrast, CD33rSiglecs expanded in primates and many are now pseudogenes with features consistent with activating receptors. In contrast to mammals, the fish CD33rSiglecs clusters show no evidence of an inverse duplication. They display greater variation in cluster size and structure than mammals. The close arrangement of other Siglecs and CD33rSiglecs in fish is consistent with a common ancestral region for Siglecs. Expansion of mammalian CD33rSiglecs appears to have followed a large inverse duplication of a smaller primordial cluster over 180 million years ago, prior to eutherian/marsupial divergence. Inverse duplications in general could potentially have a stabilizing effect in maintaining the size and structure of large gene clusters, facilitating the rapid evolution of immune gene families.

Indexed as

Evolution, MolecularAnimalsAntigens, CDAntigens, Differentiation, MyelomonocyticBase SequenceDogsGene DuplicationHumansLectinsMammalsMolecular Sequence DataPan troglodytesPhylogenyPseudogenesSialic Acid Binding Ig-like Lectin 3Sialic Acid Binding Immunoglobulin-like LectinsAntigens, CDAntigens, Differentiation, MyelomonocyticCD33 protein, humanLectinsSialic Acid Binding Ig-like Lectin 3Sialic Acid Binding Immunoglobulin-like Lectins

Identifiers

PMID19337729
OpenAlexW2130233997

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.