Evidence map›Paper›PMID 19336407›Full record

ArticleThe Journal of biological chemistry2009

Ubiquitylation on canonical and non-canonical sites targets the transcription factor neurogenin for ubiquitin-mediated proteolysis.

Jonathan M D Vosper, Gary S McDowell, Christopher J Hindley, Christelle S Fiore-Heriche, Romana Kucerova, Ian Horan, Anna Philpott

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 80 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Structural and functional validation of a highly specific Smurf2 inhibitor.Protein science : a publication of the Protein Society · 2024
    Article
  5. Article
  6. Article
  7. Proteomic approaches to study ubiquitinomics.Biochimica et biophysica acta. Gene regulatory mechanisms · 2023
    Review
  8. An expanded lexicon for the ubiquitin code.Nature reviews. Molecular cell biology · 2023
    Review
  9. Thioester and Oxyester Linkages in the Ubiquitin System.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
  10. Review
  11. Review
  12. Non-lysine ubiquitylation: Doing things differently.Frontiers in molecular biosciences · 2022
    Review
  13. Article
  14. Role of Proteasomes in Inflammation.Journal of clinical medicine · 2021
    Review
  15. Review
  16. Review
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jonathan M D VosperDepartment of Oncology, University of Cambridge, Hutchison/Medical Research Council (MRC) Research Centre, Addenbrooke's Hospital, Cambridge CB2 0XZ, United Kingdom.
Gary S McDowell
Christopher J Hindley
Christelle S Fiore-Heriche
Romana Kucerova
Ian Horan
Anna Philpott
Addenbrooke's Hospital · GBHutchison/MRC Research Centre · GBMedical Research Council · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C 004108/1Medical Research Council G0300723Medical Research Council G0700758Medical Research Council G0800784Medical Research Council GO500101
6 · The paper itself

Abstract

Polyubiquitylation targets multiple proteins for degradation by the proteasome. Typically, the first ubiquitin is linked to lysine residues in the substrate for degradation via an isopeptide bond, although rarely ubiquitin linkage to the N-terminal residue has also been observed. We have recently shown that Neurogenin (NGN), a basic helix-loop-helix transcription factor that plays a central role in regulating neuronal differentiation, is degraded by ubiquitin-mediated proteolysis. We have taken a biochemical and mutagenesis approach to investigate sites of ubiquitylation of NGN, initially using extracts of eggs from the frog Xenopus laevis as a source of ubiquitylation and degradation components. NGN can be targeted for destruction by ubiquitylation via lysines or the N terminus. However, we see that a modified NGN, where canonical lysine ubiquitylation and N-terminally linked ubiquitylation are prevented, is nevertheless ubiquitylated and degraded by the proteasome. We show that polyubiquitin chains covalently attach to non-canonical cysteine residues in NGN, and these non-canonical linkages alone are capable of targeting NGN protein for destruction. Importantly, canonical and non-canonical ubiquitylation occurs simultaneously in the native protein and may differ in importance for driving degradation in interphase and mitosis. We conclude that native NGN is ubiquitylated on multiple canonical and non-canonical sites by cellular ubiquitin ligases, and all types of linkage can contribute to protein turnover.

Indexed as

AcetylationAnimalsBasic Helix-Loop-Helix ProteinsEmbryo, NonmammalianFemaleLysineMethionineMitosisNerve Tissue ProteinsOvumSubstrate SpecificityUbiquitinXenopusBasic Helix-Loop-Helix ProteinsLysineMethionineNerve Tissue ProteinsNeurogenic differentiation factor 1Ubiquitin

Identifiers

PMID19336407
PMCPMC2708843
OpenAlexW2164951109

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.