Evidence map›Paper›PMID 19333917›Full record

ArticleArthritis and rheumatism2009

Variants within MECP2, a key transcription regulator, are associated with increased susceptibility to lupus and differential gene expression in patients with systemic lupus erythematosus.

Ryan Webb, Jonathan D Wren, Matlock Jeffries, Jennifer A Kelly, Kenneth M Kaufman, Yuhong Tang, Mark Barton Frank, Joan Merrill, Robert P Kimberly, Jeffrey C Edberg and 13 more

Open access · greenAbstract read
In one paragraph

Article in Arthritis and rheumatism, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 87 citations in OpenAlex.

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  14. Correlations of Expression Levels of a Panel of Genes (BioMed research international · 2019
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  17. When the Lyon(ized chromosome) roars: ongoing expression from an inactive X chromosome.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 11 institutions in 4 countries.

Ryan WebbOklahoma Medical Research Foundation, and University of Oklahoma Health Sciences Center, Oklahoma City, USA.
Jonathan D Wren
Matlock Jeffries
Jennifer A Kelly
Kenneth M Kaufman
Yuhong Tang
Mark Barton Frank
Joan Merrill
Robert P Kimberly
Jeffrey C Edberg
Rosalind Ramsey-Goldman
Michelle Petri
John D Reveille
Graciela S Alarcón
Luis M Vilá
Marta E Alarcón-Riquelme
Judith A James
Timothy J Vyse
Kathy L Moser
Patrick M Gaffney
Gary S Gilkeson
John B Harley
Amr H Sawalha
Oklahoma Medical Research Foundation · USUniversity of Oklahoma · USUniversity of Alabama · USHammersmith Hospital · GBJohns Hopkins University · USMedical University of South Carolina · USNoble Research Institute · USNorthwestern University · USThe University of Texas Health Science Center at Houston · USUniversity of Puerto Rico System · PRUppsala University · SE

Funding

Translation of immunologic technologies from basic research into pre-clinical nonU19AI062629 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI FARRIS, A DARISE · 2004 to 2023
$56.2M
VACCINE-TARGETED IDENTIFICATION OF FITNESS DETERMINANTS IN THE HIV-1 ENVELOPEP20RR016478 · NCRR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI DEBANZIE, JOHN S · 2001 to 2011
$35.8M
MULTIDISCIPLINARY CLINICAL AND TRANSLATIONAL SCIENCE (MCTS) PROGRAM (UL1)UL1RR025741 · NCRR · NORTHWESTERN UNIVERSITY AT CHICAGO · PI GREENLAND, PHILIP · 2008 to 2011
$24.7M
THE EFFECTS OF ERK PATHWAY INHIBITION ON DNA METHYLATION IN SLEP20RR015577 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI CENTOLA, MICHAEL B · 2000 to 2009
$21.5M
VALIDATING NOVEL GENES IMPLICATED IN LEUKOCYTE CHEMOTAXISP20RR020143 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KAUFMAN, KENNETH M · 2004 to 2011
$21.0M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
HLA GENE COMPLEMENTATION IN PRIMARY SJOGREN'S AND LUPUSR01AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KOTTYAN, LEAH CLAIRE, WEIRAUCH, MATTHEW TYSON · 1987 to 2025
$7.8M
SNP Confirmation and High Throughput Genotyping CoreP30AR053483 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI CHAKRAVARTY, ELIZA F · 2007 to 2017
$6.7M
GENE MAPPING IN WOMEN WITH SYSTEMIC LUPUS ERYTHEMATOSUSR01AR043274 · NIAMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SIVILS, KATHY L. · 1996 to 2010
$6.5M
THROMBOCYTOPENIA AND THE GENETICS OF SEVERE LUPUSP50AR048940 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI REICHLIN, MORRIS · 2002 to 2006
$5.8M
GENETIC ASSOCIATION WITH LUPUS IN AMERICAN BLACKSR01AR042460 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 1993 to 2009
$5.1M
Genetic Linkage in LupusR37AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 2005 to 2014
$4.2M
NCRR NIH HHS P20 RR015577NCRR NIH HHS P20-RR-015577NCRR NIH HHS P20 RR016478NCRR NIH HHS P20-RR-016478NCRR NIH HHS P20 RR020143NCRR NIH HHS P20-RR-020143NCRR NIH HHS P20-RR-15577NCRR NIH HHS UL1 RR025741NIAID NIH HHS AI-063274NIAID NIH HHS R01 AI024717NIAID NIH HHS R01 AI031584NIAID NIH HHS R01-AI-031584NIAID NIH HHS R03 AI076729NIAID NIH HHS R03-AI-076729NIAID NIH HHS R37 AI024717NIAID NIH HHS R37-AI-024717NIAID NIH HHS U19 AI062629NIAID NIH HHS U19-AI-062629NIAMS NIH HHS AR-043274NIAMS NIH HHS AR-048940NIAMS NIH HHS AR061-015NIAMS NIH HHS AR081-006NIAMS NIH HHS N01 AR062277NIAMS NIH HHS P01-AR-049084NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P50 AR048940NIAMS NIH HHS R01 AR042460NIAMS NIH HHS R01-AR-042460NIAMS NIH HHS R21 AR081006NIAMS NIH HHS R37-AR-062277
6 · The paper itself

Abstract

objectiveBoth genetic and epigenetic factors play an important role in the pathogenesis of lupus. The aim of this study was to examine methyl-CpG-binding protein 2 gene (MECP2) polymorphisms in a large cohort of patients with lupus and control subjects, and to determine the functional consequences of the lupus-associated MECP2 haplotype.

methodsWe genotyped 18 single-nucleotide polymorphisms within MECP2, located on chromosome Xq28, in a large cohort of patients with lupus and control subjects of European descent. We studied the functional effects of the lupus-associated MECP2 haplotype by determining gene expression profiles in B cell lines in female lupus patients with and those without the lupus-associated MECP2 risk haplotype.

resultsWe confirmed, replicated, and extended the genetic association between lupus and genetic markers within MECP2 in a large independent cohort of lupus patients and control subjects of European descent (odds ratio 1.35, P = 6.65 x 10(-11)). MECP2 is a dichotomous transcription regulator that either activates or represses gene expression. We identified 128 genes that are differentially expressed in lupus patients with the disease-associated MECP2 haplotype; most ( approximately 81%) were up-regulated. Genes that were up-regulated had significantly more CpG islands in their promoter regions compared with genes that were down-regulated. Gene ontology analysis using the differentially expressed genes revealed significant association with epigenetic regulatory mechanisms, suggesting that these genes are targets for MECP2 regulation in B cells. Furthermore, at least 13 of the 104 up-regulated genes are regulated by interferon. The disease-risk MECP2 haplotype was associated with increased expression of the MECP2 transcription coactivator CREB1 and decreased expression of the corepressor histone deacetylase 1.

conclusionPolymorphism in the MECP2 locus is associated with lupus and, at least in part, contributes to the interferon signature observed in lupus patients.

Indexed as

B-LymphocytesCells, CulturedCohort StudiesEpigenesis, GeneticFemaleGene FrequencyGenetic Predisposition to DiseaseGenetic VariationHaplotypesHumansLupus Erythematosus, SystemicMaleMethyl-CpG-Binding Protein 2PhenotypePolymorphism, Single NucleotideRisk FactorsMECP2 protein, humanMethyl-CpG-Binding Protein 2

Identifiers

PMID19333917
PMCPMC2734382
OpenAlexW2045286317

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.