Evidence map›Paper›PMID 19333476›Full record

ArticleChemical communications (Cambridge, England)2009

A conformational transition in the structure of a 2'-thiomethyl-modified DNA visualized at high resolution.

Pradeep S Pallan, Thazha P Prakash, Feng Li, Robert L Eoff, Muthiah Manoharan, Martin Egli

Abstract read
In one paragraph

Article in Chemical communications (Cambridge, England), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Pradeep S PallanDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232, USA.
Thazha P Prakash
Feng Li
Robert L Eoff
Muthiah Manoharan
Martin Egli

Funding

STRUCTURE/FUNCTION OF NUCLEIC ACID THERAPEUTICSR01GM055237 · NIGMS · VANDERBILT UNIVERSITY · PI EGLI, MARTIN · 1997 to 2012
$3.3M
NIGMS NIH HHS R01 GM055237NIGMS NIH HHS R01 GM55237
6 · The paper itself

Abstract

Crystal structures of A-form and B-form DNA duplexes containing 2'-S-methyl-uridines reveal that the modified residues adopt a RNA-like C3'-endo pucker, illustrating that the replacement of electronegative oxygen at the 2'-carbon of RNA by sulfur does not appear to fundamentally alter the conformational preference of the sugar in the oligonucleotide context and sterics trump stereoelectronics.

Indexed as

Crystallography, X-RayDNANucleic Acid ConformationRNASulfhydryl CompoundsUridineDNARNASulfhydryl CompoundsUridine

Identifiers

PMID19333476
PMCPMC2909737

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.