Evidence map›Paper›PMID 19333384›Full record

ArticlePloS one2009

Extensive HIV-1 intra-host recombination is common in tissues with abnormal histopathology.

Susanna L Lamers, Marco Salemi, Derek C Galligan, Tulio de Oliveira, Gary B Fogel, Sara C Granier, Li Zhao, Joseph N Brown, Alanna Morris, Eliezer Masliah and 1 more

Abstract read
In one paragraph

Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. Article
  7. Predicted coreceptor usage at end-stage HIV disease in tissues derived from subjects on antiretroviral therapy with an undetectable plasma viral load.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2017
    Article
  8. Article
  9. Review
  10. Article
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  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Susanna L LamersBioInfoExperts, Thibodaux, LA, USA.
Marco Salemi
Derek C Galligan
Tulio de Oliveira
Gary B Fogel
Sara C Granier
Li Zhao
Joseph N Brown
Alanna Morris
Eliezer Masliah
Michael S McGrath

Funding

West Coast AIDS and Cancer Specimen Resource (ACSR)U01CA066529 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCGRATH, MICHAEL SHANNON · 1994 to 2012
$16.1M
HIV-1 VARIANTS WITHIN PBMC SUBPOPULATIONS IN INFANTSR01HD032259 · NICHD · UNIVERSITY OF FLORIDA · PI GOODENOW, MAUREEN M · 1995 to 2007
$2.8M
Role of HIV-1 Env Diversity in Cellular TropismR01AI065265 · NIAID · UNIVERSITY OF FLORIDA · PI GOODENOW, MAUREEN M · 2005 to 2009
$2.1M
HIV Sequence Evolution in AIDS Dementia PathogenesisR01MH073510 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCGRATH, MICHAEL SHANNON · 2005 to 2009
$1.5M
HIV 1 VARIANTS WITHIN PBMC SUBPOPULATIONS IN INFANTSR55HD032259 · NICHD · UNIVERSITY OF FLORIDA · PI GOODENOW, MAUREEN M · 1994 to 1994
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NCI NIH HHS U01 CA066529NCI NIH HHS U01 CA066529-12NIAID NIH HHS AI065265NIAID NIH HHS R01 AI065265NICHD NIH HHS HD32259NICHD NIH HHS R01 HD032259NIMH NIH HHS R01 MH073510NIMH NIH HHS R01 MH073510-01
6 · The paper itself

Abstract

There is evidence that immune-activated macrophages infected with the Human Immunodeficiency Virus (HIV) are associated with tissue damage and serve as a long-lived viral reservoir during therapy. In this study, we analyzed 780 HIV genetic sequences generated from 53 tissues displaying normal and abnormal histopathology. We found up to 50% of the sequences from abnormal lymphoid and macrophage rich non-lymphoid tissues were intra-host viral recombinants. The presence of extensive recombination, especially in non-lymphoid tissues, implies that HIV-1 infected macrophages may significantly contribute to the generation of elusive viral genotypes in vivo. Because recombination has been implicated in immune evasion, the acquisition of drug-resistance mutations, and alterations of viral co-receptor usage, any attempt towards the successful eradication of HIV-1 requires therapeutic approaches targeting tissue macrophages.

Indexed as

Recombination, GeneticBase SequenceGenes, ViralHIV-1Host-Pathogen InteractionsHumansLymphoid TissueMacrophages

Identifiers

PMID19333384
PMCPMC2659430

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.