Evidence map›Paper›PMID 19332556›Full record

ArticleMolecular and cellular biology2009

A novel small-subunit processome assembly intermediate that contains the U3 snoRNP, nucleolin, RRP5, and DBP4.

Amy Jane Turner, Andrew Alexander Knox, José-Luis Prieto, Brian McStay, Nicholas James Watkins

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 73 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Amy Jane TurnerInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, United Kingdom.
Andrew Alexander Knox
José-Luis Prieto
Brian McStay
Nicholas James Watkins
Newcastle University · GBUniversity of Dundee · GB

Funding

Medical Research Council G0500323Medical Research Council G0501666
6 · The paper itself

Abstract

Eukaryotic 18S rRNA processing is mediated by the small subunit (SSU) processome, a machine comprised of the U3 small nucleolar RNP (U3 snoRNP), tUTP, bUTP, MPP10, and BMS1/RCL1 subcomplexes. We report that the human SSU processome is a dynamic structure with the recruitment and release of subcomplexes occurring during the early stages of ribosome biogenesis. A novel 50S U3 snoRNP accumulated when either pre-rRNA transcription was blocked or the tUTP proteins were depleted. This complex did not contain the tUTP, bUTP, MPP10, and BMS1/RCL1 subcomplexes but was associated with the RNA-binding proteins nucleolin and RRP5 and the RNA helicase DBP4. Our data suggest that the 50S U3 snoRNP is an SSU assembly intermediate that is likely recruited to the pre-rRNA through the RNA-binding proteins nucleolin and RRP5. We predict that nucleolin is only transiently associated with the SSU processome and likely leaves the complex not long after 50S U3 snoRNP recruitment. The nucleolin-binding site potentially overlaps that of several other key factors, and we propose that this protein must leave the SSU processome for pre-rRNA processing to occur.

Indexed as

Cell NucleolusDEAD-box RNA HelicasesHeLa CellsHumansNuclear ProteinsNucleolinPhosphoproteinsProtein BindingProtein SubunitsProtein TransportRibonucleoproteins, Small NucleolarRNA-Binding ProteinsRNA HelicasesRNA Polymerase IRNA PrecursorsTranscription, GeneticDDX10 protein, humanDEAD-box RNA HelicasesNuclear ProteinsNucleolinPhosphoproteinsProtein SubunitsRibonucleoproteins, Small Nucleolarribonucleoprotein, U3 small nucleolarRNA-Binding ProteinsRNA HelicasesRNA Polymerase IRNA Precursors

Identifiers

PMID19332556
PMCPMC2682003
OpenAlexW2153095907

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.