Evidence map›Paper›PMID 19330365›Full record

ArticleFunctional & integrative genomics2009

Transcriptome pathways unique to dehydration tolerant relatives of modern wheat.

Neslihan Z Ergen, Jyothi Thimmapuram, Hans J Bohnert, Hikmet Budak

Abstract read
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In one paragraph

Article in Functional & integrative genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
11.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed, 146 citations in OpenAlex.

  1. Review
  2. Deciphering drought-response in wheat (Frontiers in plant science · 2025
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  4. Genome-wide identification ofFrontiers in genetics · 2024
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  6. Water stress resilient cereal crops: Lessons from wild relatives.Journal of integrative plant biology · 2022
    Review
  7. Review
  8. Plant Mitogen-Activated Protein Kinase Cascades in Environmental Stresses.International journal of molecular sciences · 2021
    Review
  9. Article
  10. Overexpression of a Poplar RING-H2 Zinc Finger,International journal of molecular sciences · 2020
    Article
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6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Neslihan Z ErgenBiological Sciences & Bioengineering Program, Faculty of Engineering and Natural Sciences, Sabanci University, Tuzla, Istanbul, Turkey.
Jyothi Thimmapuram
Hans J Bohnert
Hikmet Budak
Sabancı Üniversitesi · TRUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Among abiotic stressors, drought is a major factor responsible for dramatic yield loss in agriculture. In order to reveal differences in global expression profiles of drought tolerant and sensitive wild emmer wheat genotypes, a previously deployed shock-like dehydration process was utilized to compare transcriptomes at two time points in root and leaf tissues using the Affymetrix GeneChip(R) Wheat Genome Array hybridization. The comparison of transcriptomes reveal several unique genes or expression patterns such as differential usage of IP(3)-dependent signal transduction pathways, ethylene- and abscisic acid (ABA)-dependent signaling, and preferential or faster induction of ABA-dependent transcription factors by the tolerant genotype that distinguish contrasting genotypes indicative of distinctive stress response pathways. The data also show that wild emmer wheat is capable of engaging known drought stress responsive mechanisms. The global comparison of transcriptomes in the absence of and after dehydration underlined the gene networks especially in root tissues that may have been lost in the selection processes generating modern bread wheats.

Indexed as

DroughtsGene Expression ProfilingCluster AnalysisCrops, AgriculturalGene Expression Regulation, PlantGenotypeHumansMicroarray AnalysisMolecular Sequence DataOligonucleotide Array Sequence AnalysisPhenotypeProlineStress, PhysiologicalTriticumProline

Identifiers

PMID19330365
OpenAlexW2055591503

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.