Evidence map›Paper›PMID 19328067›Full record

ArticleMolecular cell2009

TFIIH and P-TEFb coordinate transcription with capping enzyme recruitment at specific genes in fission yeast.

Laia Viladevall, Courtney V St Amour, Adam Rosebrock, Susanne Schneider, Chao Zhang, Jasmina J Allen, Kevan M Shokat, Beate Schwer, Janet K Leatherwood, Robert P Fisher

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 121 citations in OpenAlex.

  1. Targeting CDKs in the RNAPII transcription cycle.Nature reviews. Drug discovery · 2026
    Review
  2. Article
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  8. Structural basis of Cdk7 activation by dual T-loop phosphorylation.bioRxiv : the preprint server for biology · 2024
    Article
  9. Cyclin-dependent kinases: Masters of the eukaryotic universe.Wiley interdisciplinary reviews. RNA · 2023
    Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Dynamics of RNA polymerase II and elongation factor Spt4/5 recruitment during activator-dependent transcription.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
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21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Laia ViladevallMolecular Biology Program, Memorial Sloan-Kettering Cancer Center, New York, NY 10065, USA.
Courtney V St Amour
Adam Rosebrock
Susanne Schneider
Chao Zhang
Jasmina J Allen
Kevan M Shokat
Beate Schwer
Janet K Leatherwood
Robert P Fisher
Howard Hughes Medical Institute · USMemorial Sloan Kettering Cancer Center · USCornell University · USState University of New York · US

Funding

mRNA Capping EnzymesR01GM052470 · NIGMS · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SCHWER, BEATE, SHUMAN, STEWART H · 1995 to 2019
$9.9M
Using chemical genetics to investigate mechanisms of anesthetic actionR01EB001987 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHOKAT, KEVAN M. · 2003 to 2012
$2.9M
The CDK Activation Network of Fission YeastR01GM076021 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI FISHER, ROBERT P · 2008 to 2011
$1.4M
Transcription circuitry of the S. pombe cell cycleR01GM076272 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI LEATHERWOOD, JANET K · 2007 to 2010
$1.1M
NIBIB NIH HHS EB001987NIBIB NIH HHS R01 EB001987NIGMS NIH HHS GM052470NIGMS NIH HHS GM076021NIGMS NIH HHS GM076272NIGMS NIH HHS R01 GM052470NIGMS NIH HHS R01 GM076021NIGMS NIH HHS R01 GM076272
6 · The paper itself

Abstract

Cyclin-dependent kinases (CDKs) are subunits of transcription factor (TF) IIH and positive transcription elongation factor b (P-TEFb). To define their functions, we mutated the TFIIH-associated kinase Mcs6 and P-TEFb homologs Cdk9 and Lsk1 of fission yeast, making them sensitive to inhibition by bulky purine analogs. Selective inhibition of Mcs6 or Cdk9 blocks cell division, alters RNA polymerase (Pol) II carboxyl-terminal domain (CTD) phosphorylation, and represses specific, overlapping subsets of transcripts. At a common target gene, both CDKs must be active for normal Pol II occupancy, and Spt5-a CDK substrate and regulator of elongation-accumulates disproportionately to Pol II when either kinase is inhibited. In contrast, Mcs6 activity is sufficient-and necessary-to recruit the Cdk9/Pcm1 (mRNA cap methyltransferase) complex. In vitro, phosphorylation of the CTD by Mcs6 stimulates subsequent phosphorylation by Cdk9. We propose that TFIIH primes the CTD and promotes recruitment of P-TEFb/Pcm1, serving to couple elongation and capping of select pre-mRNAs.

Indexed as

Transcription, GeneticChromosomal Proteins, Non-HistoneCyclin-Dependent Kinase 9Cyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesMethyltransferasesMutationOligonucleotide Array Sequence AnalysisPhosphorylationPositive Transcriptional Elongation Factor BProtein KinasesReverse Transcriptase Polymerase Chain ReactionRNA CapsRNA Polymerase IISchizosaccharomycesSchizosaccharomyces pombe ProteinsChromosomal Proteins, Non-HistoneCyclin-Dependent Kinase 9Cyclin-Dependent Kinase-Activating KinaseCyclin-Dependent KinasesLsk1 protein, S pombeMethyltransferasesmRNA (guanine(N7))-methyltransferasePositive Transcriptional Elongation Factor BProtein KinasesRNA CapsRNA Polymerase IISchizosaccharomyces pombe ProteinsSPT5 transcriptional elongation factorTranscriptional Elongation FactorsTranscription Factor TFIIH

Identifiers

PMID19328067
PMCPMC2693121
OpenAlexW2126370137

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.