ArticleComputer methods and programs in biomedicine2009
SNPit: a federated data integration system for the purpose of functional SNP annotation.
Article in Computer methods and programs in biomedicine, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
11 citing papers in PubMed.
- Natural variability of minimotifs in 1092 people indicates that minimotifs are targets of evolution.Nucleic acids research · 2015Article
- Towards precision medicine: advances in computational approaches for the analysis of human variants.Journal of molecular biology · 2013Review
- Snpdat: easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms.BMC bioinformatics · 2013Article
- GWASdb: a database for human genetic variants identified by genome-wide association studies.Nucleic acids research · 2012Article
- Snat: a SNP annotation tool for bovine by integrating various sources of genomic information.BMC genetics · 2011Article
- dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions.Human mutation · 2011Article
- AnnotQTL: a new tool to gather functional and comparative information on a genomic region.Nucleic acids research · 2011Article
- FunctSNP: an R package to link SNPs to functional knowledge and dbAutoMaker: a suite of Perl scripts to build SNP databases.BMC bioinformatics · 2010Article
- Evaluation of probabilistic and logical inference for a SNP annotation system.Journal of biomedical informatics · 2010Article
- Evaluating the accuracy of a functional SNP annotation system.BMC bioinformatics · 2009Article
- Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases.Journal of the American Medical Informatics Association : JAMIAArticle
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
Abstract
Genome wide association studies can potentially identify the genetic causes behind the majority of human diseases. With the advent of more advanced genotyping techniques, there is now an explosion of data gathered on single nucleotide polymorphisms (SNPs). The need exists for an integrated system that can provide up-to-date functional annotation information on SNPs. We have developed the SNP Integration Tool (SNPit) system to address this need. Built upon a federated data integration system, SNPit provides current information on a comprehensive list of SNP data sources. Additional logical inference analysis was included through an inference engine plug in. The SNPit web servlet is available online for use. SNPit allows users to go to one source for up-to-date information on the functional annotation of SNPs. A tool that can help to integrate and analyze the potential functional significance of SNPs is important for understanding the results from genome wide association studies.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.