Evidence map›Paper›PMID 19326244›Full record

ArticlePlant molecular biology2009

Comprehensive analysis of the regulatory roles of auxin in early transdifferentiation into xylem cells.

Saiko Yoshida, Kuninori Iwamoto, Taku Demura, Hiroo Fukuda

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Comprehensive Effects ofFrontiers in plant science · 2022
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. A map of cell type-specific auxin responses.Molecular systems biology · 2013
    Article
  10. Article
  11. Article
  12. Phloem-associated auxin response maxima determine radial positioning of lateral roots in maize.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Saiko YoshidaDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, Japan. saiko.yoshida@ips.unibe.ch
Kuninori Iwamoto
Taku Demura
Hiroo Fukuda
The University of Tokyo · JPRIKEN Center for Sustainable Resource Science · JPUniversity of Bern · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxin is essential for the formation of the vascular system. We previously reported that a polar auxin transport inhibitor, 1-N-naphthylphthalamic acid (NPA) decreased intracellular auxin levels and prevented tracheary element (TE) differentiation from isolated Zinnia mesophyll cells, but that additional auxin, 1-naphthaleneacetic acid (NAA) overcame this inhibition. To understand the role of auxin in gene regulation during TE differentiation, we performed microarray analysis of genes expressed in NPA-treated cells and NPA-NAA-treated cells. The systematic gene expression analysis revealed that NAA promoted the expression of genes related to auxin signaling and transcription factors that are known to be key regulators of differentiation of procambial and xylem precursor cells. NAA also promoted the expression of genes related to biosynthesis and metabolism of other plant hormones, such as cytokinin, gibberellin and brassinosteroid. Interestingly, detailed analysis showed that NAA rapidly induces the expression of auxin carrier gene homologues. It suggested a positive feedback loop for auxin-regulating vascular differentiation. Based on these results, we discuss the auxin function in early processes of transdifferentiation into TEs.

Indexed as

Abscisic AcidAsteraceaeBrassinosteroidsCarrier ProteinsCells, CulturedCell TransdifferentiationCholestanolsCluster AnalysisCyclopentanesCytokininsEthylenesGene Expression ProfilingGene Expression Regulation, PlantGibberellinsIndoleacetic AcidsMolecular Sequence Data1-naphthaleneacetic acidAbscisic AcidbrassinolideBrassinosteroidsCarrier ProteinsCholestanolsCyclopentanescytokinin oxidaseCytokininsethyleneEthylenesGibberellinsIndoleacetic Acidsjasmonic acidNaphthaleneacetic AcidsOxidoreductasesOxylipinsPhytosterolsPlant Growth RegulatorsPlant ProteinsSteroids, Heterocyclic

Identifiers

PMID19326244
OpenAlexW2113228683

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.