Evidence map›Paper›PMID 19325880›Full record

ArticlePLoS pathogens2009

Genomic evidence for the evolution of Streptococcus equi: host restriction, increased virulence, and genetic exchange with human pathogens.

Matthew T G Holden, Zoe Heather, Romain Paillot, Karen F Steward, Katy Webb, Fern Ainslie, Thibaud Jourdan, Nathalie C Bason, Nancy E Holroyd, Karen Mungall and 16 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
21.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 262 citations in OpenAlex.

  1. Review
  2. Materials today. Bio · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. ImmunogenicmSphere · 2025
    Article
  9. Article
  10. Streptococcus equi subsp. equi isolated from horses in Southern Brazil: molecular and phenotypic analyses.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  11. Article
  12. Progressive evolution ofMicrobial genomics · 2025
    Article
  13. Molecular study ofOpen veterinary journal · 2025
    Article
  14. Review
  15. Geographic diversity of theFrontiers in veterinary science · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Abortion and Lethal Septicaemia in Sows Caused by a Non-ST194Transboundary and emerging diseases · 2024
    Article
  20. Article

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 1 country.

Matthew T G HoldenWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.
Zoe Heather
Romain Paillot
Karen F Steward
Katy Webb
Fern Ainslie
Thibaud Jourdan
Nathalie C Bason
Nancy E Holroyd
Karen Mungall
Michael A Quail
Mandy Sanders
Mark Simmonds
David Willey
Karen Brooks
David M Aanensen
Brian G Spratt
Keith A Jolley
Martin C J Maiden
Michael Kehoe
Neil Chanter
Stephen D Bentley
Carl Robinson
Duncan J Maskell
Julian Parkhill
Andrew S Waller
Wellcome Sanger Institute · GBAnimal Health Trust · GBMedawar Building for Pathogen Research · GBSt Mary's Hospital · GBNewcastle University · GBUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G019274/1Wellcome Trust 047072Wellcome Trust 087622Wellcome Trust 089472
6 · The paper itself

Abstract

The continued evolution of bacterial pathogens has major implications for both human and animal disease, but the exchange of genetic material between host-restricted pathogens is rarely considered. Streptococcus equi subspecies equi (S. equi) is a host-restricted pathogen of horses that has evolved from the zoonotic pathogen Streptococcus equi subspecies zooepidemicus (S. zooepidemicus). These pathogens share approximately 80% genome sequence identity with the important human pathogen Streptococcus pyogenes. We sequenced and compared the genomes of S. equi 4047 and S. zooepidemicus H70 and screened S. equi and S. zooepidemicus strains from around the world to uncover evidence of the genetic events that have shaped the evolution of the S. equi genome and led to its emergence as a host-restricted pathogen. Our analysis provides evidence of functional loss due to mutation and deletion, coupled with pathogenic specialization through the acquisition of bacteriophage encoding a phospholipase A(2) toxin, and four superantigens, and an integrative conjugative element carrying a novel iron acquisition system with similarity to the high pathogenicity island of Yersinia pestis. We also highlight that S. equi, S. zooepidemicus, and S. pyogenes share a common phage pool that enhances cross-species pathogen evolution. We conclude that the complex interplay of functional loss, pathogenic specialization, and genetic exchange between S. equi, S. zooepidemicus, and S. pyogenes continues to influence the evolution of these important streptococci.

Indexed as

Evolution, MolecularGenes, BacterialAnimalsBacteriophagesGenomeHorsesHumansMolecular Sequence DataReverse Transcriptase Polymerase Chain ReactionStreptococcus equiStreptococcus pyogenesVirulence

Identifiers

PMID19325880
PMCPMC2654543
OpenAlexW2009320470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.