ArticleEvolutionary bioinformatics online2007
MySSP: non-stationary evolutionary sequence simulation, including indels.
Article in Evolutionary bioinformatics online, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
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Who cites it
15 citing papers in PubMed.
- Insertions and Deletions: Computational Methods, Evolutionary Dynamics, and Biological Applications.Molecular biology and evolution · 2024Review
- Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families.NAR genomics and bioinformatics · 2022Article
- The Cumulative Indel Model: Fast and Accurate Statistical Evolutionary Alignment.Systematic biology · 2021Article
- SAliBASE: A Database of Simulated Protein Alignments.Evolutionary bioinformatics online · 2019Review
- Trends in substitution models of molecular evolution.Frontiers in genetics · 2015Article
- Evaluating the accuracy and efficiency of multiple sequence alignment methods.Evolutionary bioinformatics online · 2014Article
- Simulation of molecular data under diverse evolutionary scenarios.PLoS computational biology · 2012Article
- ALF--a simulation framework for genome evolution.Molecular biology and evolution · 2012Article
- SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation.BMC bioinformatics · 2011Article
- PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment.BMC bioinformatics · 2011Article
- Evaluation of methods for detecting conversion events in gene clusters.BMC bioinformatics · 2011Article
- Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0.Molecular biology and evolution · 2009Article
- INDELible: a flexible simulator of biological sequence evolution.Molecular biology and evolution · 2009Article
- The accuracy of several multiple sequence alignment programs for proteins.BMC bioinformatics · 2006Article
- Multiple sequence alignment accuracy and evolutionary distance estimation.BMC bioinformatics · 2005Article
Corrections and comments
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Authors and funding
1 author.
Funding
Abstract
MySSP is a new program for the simulation of DNA sequence evolution across a phylogenetic tree. Although many programs are available for sequence simulation, MySSP is unique in its inclusion of indels, flexibility in allowing for non-stationary patterns, and output of ancestral sequences. Some of these features can individually be found in existing programs, but have not all have been previously available in a single package.
Indexed as
Identifiers
19325855PMC2658873What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.