Evidence map›Paper›PMID 19321665›Full record

ArticleMolecular biology of the cell2009

Trf1 is not required for proliferation or functional telomere maintenance in chicken DT40 cells.

Carol Cooley, Katie M Baird, Virginie Faure, Thomas Wenner, Jillian L Stewart, Sonie Modino, Predrag Slijepcevic, Christine J Farr, Ciaran G Morrison

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genetic variation exists for telomeric array organization within and among the genomes of normal, immortalized, and transformed chicken systems.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Carol CooleyCentre for Chromosome Biology, National University of Ireland Galway, Department of Biochemistry and NCBES, Galway, Ireland.
Katie M Baird
Virginie Faure
Thomas Wenner
Jillian L Stewart
Sonie Modino
Predrag Slijepcevic
Christine J Farr
Ciaran G Morrison
Ollscoil na Gaillimhe – University of Galway · IEUniversity of Cambridge · GBBrunel University of London · GB

Funding

Medical Research Council
6 · The paper itself

Abstract

The telomere end-protection complex prevents the ends of linear eukaryotic chromosomes from degradation or inappropriate DNA repair. The homodimeric double-stranded DNA-binding protein, Trf1, is a component of this complex and is essential for mouse embryonic development. To define the requirement for Trf1 in somatic cells, we deleted Trf1 in chicken DT40 cells by gene targeting. Trf1-deficient cells proliferated as rapidly as control cells and showed telomeric localization of Trf2, Rap1, and Pot1. Telomeric G-strand overhang lengths were increased in late-passage Trf1-deficient cells, although telomere lengths were unaffected by Trf1 deficiency, as determined by denaturing Southern and quantitative FISH analysis. Although we observed some clonal variation in terminal telomere fragment lengths, this did not correlate with cellular Trf1 levels. Trf1 was not required for telomere seeding, indicating that de novo telomere formation can proceed without Trf1. The Pin2 isoform and a novel exon 4, 5-deleted isoform localized to telomeres in Trf1-deficient cells. Trf1-deficient cells were sensitive to DNA damage induced by ionizing radiation. Our data demonstrate that chicken DT40 B cells do not require Trf1 for functional telomere structure and suggest that Trf1 may have additional, nontelomeric roles involved in maintaining genome stability.

Indexed as

AnimalsCell LineCell ProliferationChickensGene TargetingIn Situ Hybridization, FluorescencePhenotypeRadiation, IonizingRNA SplicingTelomeraseTelomereTelomeric Repeat Binding Protein 1TransfectionTelomeraseTelomeric Repeat Binding Protein 1

Identifiers

PMID19321665
PMCPMC2682597
OpenAlexW2111486250

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.