Evidence map›Paper›PMID 19320991›Full record

ArticleBMC genomics2009

Developmental gene expression profiles of the human pathogen Schistosoma japonicum.

Geoffrey N Gobert, Luke Moertel, Paul J Brindley, Donald P McManus

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 134 citations in OpenAlex.

  1. Article
  2. NResearch (Washington, D.C.) · 2026
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  9. Comparative proteomics analysis ofFrontiers in cellular and infection microbiology · 2022
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  12. The Transcriptome ofFrontiers in tropical diseases · 2021
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  13. Review
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  15. Article
  16. Article
  17. Gene Expression in Developmental Stages ofInternational journal of molecular sciences · 2019
    Article
  18. Article
  19. Article
  20. Suppression ofInternational journal of molecular sciences · 2018
    Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Geoffrey N GobertDivision of Infectious Diseases & Immunology, Queensland Institute of Medical Research, Brisbane, Queensland, Australia. geoffG@qimr.edu.au
Luke Moertel
Paul J Brindley
Donald P McManus
QIMR Berghofer Medical Research Institute · AUGeorge Washington University · US

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundThe schistosome blood flukes are complex trematodes and cause a chronic parasitic disease of significant public health importance worldwide, schistosomiasis. Their life cycle is characterised by distinct parasitic and free-living phases involving mammalian and snail hosts and freshwater. Microarray analysis was used to profile developmental gene expression in the Asian species, Schistosoma japonicum. Total RNAs were isolated from the three distinct environmental phases of the lifecycle -- aquatic/snail (eggs, miracidia, sporocysts, cercariae), juvenile (lung schistosomula and paired but pre-egg laying adults) and adult (paired, mature males and egg-producing females, both examined separately). Advanced analyses including ANOVA, principal component analysis, and hierarchal clustering provided a global synopsis of gene expression relationships among the different developmental stages of the schistosome parasite.

resultsGene expression profiles were linked to the major environmental settings through which the developmental stages of the fluke have to adapt during the course of its life cycle. Gene ontologies of the differentially expressed genes revealed a wide range of functions and processes. In addition, stage-specific, differentially expressed genes were identified that were involved in numerous biological pathways and functions including calcium signalling, sphingolipid metabolism and parasite defence.

conclusionThe findings provide a comprehensive database of gene expression in an important human pathogen, including transcriptional changes in genes involved in evasion of the host immune response, nutrient acquisition, energy production, calcium signalling, sphingolipid metabolism, egg production and tegumental function during development. This resource should help facilitate the identification and prioritization of new anti-schistosome drug and vaccine targets for the control of schistosomiasis.

Indexed as

Gene Expression ProfilingOligonucleotide Array Sequence AnalysisAnalysis of VarianceAnimalsCalcium SignalingCluster AnalysisComputational BiologyFemaleGene Expression Regulation, DevelopmentalLife Cycle StagesMalePrincipal Component AnalysisRNA, HelminthSchistosoma japonicumSnailsSphingolipidsRNA, HelminthSphingolipids

Identifiers

PMID19320991
PMCPMC2670322
OpenAlexW2010017315

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.