Evidence map›Paper›PMID 19318538›Full record

ArticlePhysiological genomics2009

Superoxide dismutase 3, extracellular (SOD3) variants and lung function.

Koustav Ganguly, Martin Depner, Cheryl Fattman, Kiflai Bein, Tim D Oury, Scott C Wesselkamper, Michael T Borchers, Martina Schreiber, Fei Gao, Erika von Mutius and 3 more

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Review
  5. Review
  6. Review
  7. Copper/Zinc Superoxide Dismutase from the Crocodile IcefishAntioxidants (Basel, Switzerland) · 2020
    Article
  8. Review
  9. Article
  10. Oncotarget · 2018
    Article
  11. Article
  12. Extracellular superoxide dismutase and its role in cancer.Free radical biology & medicine · 2017
    Review
  13. Review
  14. Article
  15. Article
  16. Cu,Zn Superoxide Dismutase Genes inFrontiers in immunology · 2017
    Article
  17. Region-specific role for Pten in maintenance of epithelial phenotype and integrity.American journal of physiology. Lung cellular and molecular physiology · 2017
    Article
  18. Article
  19. Secreted phosphoprotein 1 is a determinant of lung function development in mice.American journal of respiratory cell and molecular biology · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Koustav GangulyInstitute of Lung Biology and Disease, Helmholtz Zentrum München, German Research Center for Environmental Health, Munich, Germany.
Martin Depner
Cheryl Fattman
Kiflai Bein
Tim D Oury
Scott C Wesselkamper
Michael T Borchers
Martina Schreiber
Fei Gao
Erika von Mutius
Michael Kabesch
George D Leikauf
Holger Schulz
University of Pittsburgh · USHelmholtz Zentrum München · DELudwig-Maximilians-Universität München · DEUniversity of Cincinnati · USMedizinische Hochschule Hannover · DE

Funding

Improving our mechanistic understanding of Electronic-cigarette, or vaping, product use-associated lung injuryU01ES015675 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEIKAUF, GEORGE DOUGLAS · 2006 to 2020
$8.9M
Particles in Developing Lung: Bioengineering ApproachR01HL070542 · NHLBI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI TSUDA, AKIRA · 2003 to 2007
$3.0M
EXTRACELLULAR SUPEROXIDE DISMUTASE IN PULMONARY FIBROSISR01HL063700 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI OURY, TIM D · 2000 to 2009
$2.7M
The role of ECSODF in lung repair after silica-induces injuryR01ES016000 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FATTMAN, CHERYL L · 2007 to 2012
$2.2M
Genetic Determinants of Nickel-induced Lung InjuryR01ES010562 · NIEHS · UNIVERSITY OF CINCINNATI · PI LEIKAUF, GEORGE DOUGLAS · 2001 to 2005
$1.5M
Growth Factor Protection in Acute Lung InjuryR01HL077763 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEIKAUF, GEORGE DOUGLAS · 2006 to 2009
$1.4M
Role of Metalloproteinases in Mucin Overproduction in COPDR01HL085655 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LEIKAUF, GEORGE DOUGLAS · 2008 to 2011
$1.4M
ECSOD in Asbestos-induced Pulmonary FibrosisK22ES012269 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FATTMAN, CHERYL L · 2006 to 2008
$324k
NHLBI NIH HHS HL-063700NHLBI NIH HHS HL-070542NHLBI NIH HHS HL-077763NHLBI NIH HHS HL-085655NIEHS NIH HHS ES-010562NIEHS NIH HHS ES-012269NIEHS NIH HHS ES-0150036NIEHS NIH HHS ES-015675NIEHS NIH HHS ES-016000NIEHS NIH HHS U01 ES015675
6 · The paper itself

Abstract

Polymorphisms in Superoxide dismutase 3, extracellular (SOD3) have been associated with reduced lung function and susceptibility to chronic obstructive pulmonary disease (COPD) in adults. Previously, we identified SOD3 as a contributing factor to altered ventilation efficiency (dead space volume/total lung capacity) in mice. Because SOD3 protects the extracellular matrix of the lung, we hypothesized that SOD3 variants also may influence postnatal lung function development. In this study, SOD3 transcript and protein localization were examined in mouse strains with differing ventilation efficiency [C3H/HeJ (high), JF1/Msf (low)] during postnatal lung development. Compared with C3H/HeJ mice, JF1/Msf mice had Sod3 promoter single nucleotide polymorphisms (SNPs) that could affect transcription factor binding sites and a decline in total lung SOD3 mRNA during postnatal development. In adult JF1/Msf mice, total lung SOD3 activity as well as SOD3 transcript and protein in airway epithelial and alveolar type II cells and the associated matrix decreased. In children (n = 1,555; age 9-11 yr), two common SOD3 SNPs, one located in the promoter region [C/T affecting a predicted aryl hydrocarbon receptor-xenobiotic response element (AhR-XRE) binding motif] and the other in exon 2 (Thr/Ala missense mutation), were associated with decreased forced expiratory volume in 1 s (FEV(1)), and the promoter SNP was associated with decreased maximal expiratory flow at 25% volume (MEF(25)). In vitro, a SOD3 promoter region-derived oligonucleotide containing the C variant was more effective in competing with the nuclear protein-binding capacity of a labeled probe than that containing the T variant. Along with the previous associated risk of lung function decline in COPD, these findings support a possible role of SOD3 variants in determining lung function in children.

Indexed as

Polymorphism, Single NucleotideAnimalsCell Line, TumorChildElectrophoretic Mobility Shift AssayGene Expression ProfilingGene FrequencyGenotypeHumansImmunohistochemistryIn Situ HybridizationLinkage DisequilibriumLungMiceMice, Inbred C3HPhenotypeRNA, MessengerSOD3 protein, humanSod3 protein, mouseSuperoxide Dismutase

Identifiers

PMID19318538
PMCPMC2685504
OpenAlexW2125593635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.