Evidence map›Paper›PMID 19317655›Full record

ArticleBioTechniques2009

A new method for detection and quantification of heartbeat parameters in Drosophila, zebrafish, and embryonic mouse hearts.

Martin Fink, Carles Callol-Massot, Angela Chu, Pilar Ruiz-Lozano, Juan Carlos Izpisua Belmonte, Wayne Giles, Rolf Bodmer, Karen Ocorr

Open access · goldAbstract read
In one paragraph

Article in BioTechniques, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 303 citations in OpenAlex.

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  6. BMPR2 affects valve development via ECM-receptor interaction in zebrafish.Frontiers in cell and developmental biology · 2026
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  17. Attention LSTM U-Net model forBiomedical optics express · 2024
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  18. Pygo-F773W Mutation Reveals Novel Functions beyond Wnt Signaling inInternational journal of molecular sciences · 2024
    Article
  19. Article
  20. Drosophila as a Model to Understand Second Heart Field Development.Journal of cardiovascular development and disease · 2023
    Review

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Martin FinkDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92037, USA.
Carles Callol-Massot
Angela Chu
Pilar Ruiz-Lozano
Juan Carlos Izpisua Belmonte
Wayne Giles
Rolf Bodmer
Karen Ocorr
Sanford Burnham Prebys Medical Discovery Institute · USLa Jolla Bioengineering Institute · USCenter of Regenerative Medicine in Barcelona · ESPoliclínica Gipuzkoa · ESUniversity of California, San Diego · US

Funding

HEART DEVELOPMENT IN DROSOPHILAR01HL054732 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BODMER, ROLF · 1995 to 2024
$11.3M
THE FLY HEART: A MODEL FOR AGED-RELATED CHANGES IN CARDIAC PERFORMANCEP01AG015434 · NIA · UNIVERSITY OF MINNESOTA · PI METZGER, JOSEPH MARK · 1998 to 2007
$8.8M
Control of fat accumulation in relation to cardiac function in DrosophilaR01HL084949 · NHLBI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI BODMER, ROLF · 2005 to 2008
$1.8M
NHLBI NIH HHS 1 R01 HL05484NHLBI NIH HHS R01 HL054732NHLBI NIH HHS R01 HL084949NHLBI NIH HHS R01 HL08949NIA NIH HHS P01 AG015434NIA NIH HHS P01 AG15434
6 · The paper itself

Abstract

The genetic basis of heart development is remarkably conserved from Drosophila to mammals, and insights from flies have greatly informed our understanding of vertebrate heart development. Recent evidence suggests that many aspects of heart function are also conserved and the genes involved in heart development also play roles in adult heart function. We have developed a Drosophila heart preparation and movement analysis algorithm that allows quantification of functional parameters. Our methodology combines high-speed optical recording of beating hearts with a robust, semi-automated analysis to accurately detect and quantify, on a beat-to-beat basis, not only heart rate but also diastolic and systolic intervals, systolic and diastolic diameters, percent fractional shortening, contraction wave velocity, and cardiac arrhythmicity. Here, we present a detailed analysis of hearts from adult Drosophila, 2-3-day-old zebrafish larva, and 8-day-old mouse embryos, indicating that our methodology is potentially applicable to an array of biological models. We detect progressive age-related changes in fly hearts as well as subtle but distinct cardiac deficits in Tbx5 heterozygote mutant zebrafish. Our methodology for quantifying cardiac function in these genetically tractable model systems should provide valuable insights into the genetics of heart function.

Indexed as

AlgorithmsAnimalsBlood PressureDrosophilaHeartHeart RateImage Interpretation, Computer-AssistedImaging, Three-DimensionalMiceMovementMyocardial ContractionVentricular Function, LeftZebrafish

Identifiers

PMID19317655
PMCPMC2855226
OpenAlexW2098324477

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.