Evidence map›Paper›PMID 19309106›Full record

ArticleBiochemistry2009

Characterization of peptidoglycan in fem-deletion mutants of methicillin-resistant Staphylococcus aureus by solid-state NMR.

Shasad Sharif, Sung Joon Kim, Harald Labischinski, Jacob Schaefer

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Antibiotics (Basel, Switzerland) · 2023
    Article
  9. The Staphylococcal Cell Wall.Microbiology spectrum · 2019
    Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Applications of NMR to membrane proteins.Archives of biochemistry and biophysics · 2017
    Review
  15. Article
  16. Bacterial cell wall composition and the influence of antibiotics by cell-wall and whole-cell NMR.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2015
    Review
  17. Article
  18. Article
  19. Article
  20. Membrane protein structure determination in membrana.Accounts of chemical research · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Shasad SharifDepartment of Chemistry, Washington University, One Brookings Drive, St. Louis, Missouri 63130, USA.
Sung Joon Kim
Harald Labischinski
Jacob Schaefer
MerLion Pharma (Germany) · DE

Funding

Structure of Proteins in Cell Walls by REDOR NMRR01EB002058 · NIBIB · WASHINGTON UNIVERSITY · PI SCHAEFER, JACOB · 2003 to 2013
$3.2M
NIBIB NIH HHS EB002058NIBIB NIH HHS R01 EB002058
6 · The paper itself

Abstract

Compositional analysis of the peptidoglycan (PG) of a wild-type methicillin-resistant Staphylococcus aureus and its fem-deletion mutants has been performed on whole cells and cell walls using stable-isotope labeling and rotational-echo double-resonance NMR. The labels included [1-(13)C,(15)N]glycine and l-[epsilon-(15)N]lysine (for a direct measure of the number of glycyl residues in the bridging segment), [1-(13)C]glycine and l-[epsilon-(15)N]lysine (concentration of bridge links), and d-[1-(13)C]alanine and [(15)N]glycine (concentrations of cross-links and wall teichoic acids). The bridging segment length changed from 5.0 glycyl residues (wild-type strain) to 2.5 +/- 0.1 (FemB) with modest changes in cross-link and bridge-link concentrations. This accurate in situ measurement for the FemB mutant indicates a heterogeneous PG structure with 25% monoglycyl and 75% triglycyl bridges. When the bridging segment was reduced to a single glycyl residue 1.0 +/- 0.1 (FemA), the level of cross-linking decreased by more than 20%, resulting in a high concentration of open N-terminal glycyl segments.

Indexed as

MutationBacterial ProteinsCarbon IsotopesMagnetic Resonance SpectroscopyMethicillin-Resistant Staphylococcus aureusNitrogen IsotopesPeptidoglycanBacterial ProteinsCarbon IsotopesFemB protein, Staphylococcus epidermidisNitrogen IsotopesPeptidoglycan

Identifiers

PMID19309106
PMCPMC2785074
OpenAlexW1975942496

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.