Evidence map›Paper›PMID 19308252›Full record

SynthesisPloS one2009

Genetic variation in VEGF does not contribute significantly to the risk of congenital cardiovascular malformation.

Helen R Griffin, Darroch H Hall, Ana Topf, James Eden, A Graham Stuart, Jonathan Parsons, Ian Peart, John E Deanfield, John O'Sullivan, Sonya V Babu-Narayan and 11 more

Open access · goldAbstract readMeta-Analysis
In one paragraph

Synthesis in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Genetics of congenital heart disease.Current cardiology reviews · 2010
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 12 institutions in 1 country.

Helen R GriffinInstitute of Human Genetics, Newcastle University, Newcastle upon Tyne, United Kingdom.
Darroch H Hall
Ana Topf
James Eden
A Graham Stuart
Jonathan Parsons
Ian Peart
John E Deanfield
John O'Sullivan
Sonya V Babu-Narayan
Michael A Gatzoulis
Frances A Bu'lock
Shoumo Bhattacharya
Jamie Bentham
Martin Farrall
Javier Granados Riveron
J David Brook
John Burn
Heather J Cordell
Judith A Goodship
Bernard Keavney
Newcastle University · GBRoyal Brompton Hospital · GBUniversity of Oxford · GBAlder Hey Children's Hospital · GBBristol Royal Hospital for Children · GBCentre for Human Genetics · GBFreeman Hospital · GBGlenfield Hospital · GBGreat Ormond Street Hospital · GBLeeds General Infirmary · GBQueen's Medical Centre · GBUniversity of Nottingham · GB

Funding

British Heart Foundation PG/07/045/22690British Heart Foundation RG/07/010/23676British Heart Foundation RG/08/012/25941Medical Research CouncilWellcome Trust
6 · The paper itself

Abstract

Several previous studies have investigated the role of common promoter variants in the vascular endothelial growth factor (VEGF) gene in causing congenital cardiovascular malformation (CVM). However, results have been discrepant between studies and no study to date has comprehensively characterised variation throughout the gene. We genotyped 771 CVM cases, of whom 595 had the outflow tract malformation Tetralogy of Fallot (TOF), and carried out TDT and case-control analyses using haplotype-tagging SNPs in VEGF. We carried out a meta-analysis of previous case-control or family-based studies that had typed VEGF promoter SNPs, which included an additional 570 CVM cases. To identify rare variants potentially causative of CVM, we carried out mutation screening in all VEGF exons and splice sites in 93 TOF cases. There was no significant effect of any VEGF haplotype-tagging SNP on the risk of CVM in our analyses of 771 probands. When the results of this and all previous studies were combined, there was no significant effect of the VEGF promoter SNPs rs699947 (OR 1.05 [95% CI 0.95-1.17]); rs1570360 (OR 1.17 [95% CI 0.99-1.26]); and rs2010963 (OR 1.04 [95% CI 0.93-1.16]) on the risk of CVM in 1341 cases. Mutation screening of 93 TOF cases revealed no VEGF coding sequence variants and no changes at splice consensus sequences. Genetic variation in VEGF appears to play a small role, if any, in outflow tract CVM susceptibility.

Indexed as

Genetic VariationCardiovascular AbnormalitiesCase-Control StudiesGenotypeHumansMutationPolymorphism, Single NucleotidePromoter Regions, GeneticRiskTetralogy of FallotVascular Endothelial Growth Factor AVascular Endothelial Growth Factor A

Identifiers

PMID19308252
PMCPMC2654913
OpenAlexW1984397558

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.