Evidence map›Paper›PMID 19307607›Full record

ArticleGenetics2009

Detection of protein-protein interactions through vesicle targeting.

Jacob H Boysen, Saranna Fanning, Justin Newberg, Robert F Murphy, Aaron P Mitchell

Abstract read
In one paragraph

Article in Genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Protein-Protein Interactions inFrontiers in microbiology · 2019
    Review
  3. A High-ThroughputmSphere · 2018
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jacob H BoysenDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, USA.
Saranna Fanning
Justin Newberg
Robert F Murphy
Aaron P Mitchell

Funding

Genetic Control of Entry into Meiosis in YeastR01AI070272 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MITCHELL, AARON P · 2006 to 2010
$1.9M
NIAID NIH HHS 5R01AI070272NIAID NIH HHS R01 AI070272
6 · The paper itself

Abstract

The detection of protein-protein interactions through two-hybrid assays has revolutionized our understanding of biology. The remarkable impact of two-hybrid assay platforms derives from their speed, simplicity, and broad applicability. Yet for many organisms, the need to express test proteins in Saccharomyces cerevisiae or Escherichia coli presents a substantial barrier because variations in codon specificity or bias may result in aberrant protein expression. In particular, nonstandard genetic codes are characteristic of several eukaryotic pathogens, for which there are currently no genetically based systems for detection of protein-protein interactions. We have developed a protein-protein interaction assay that is carried out in native host cells by using GFP as the only foreign protein moiety, thus circumventing these problems. We show that interaction can be detected between two protein pairs in both the model yeast S. cerevisiae and the fungal pathogen Candida albicans. We use computational analysis of microscopic images to provide a quantitative and automated assessment of confidence.

Indexed as

Candida albicansComputational BiologyEndosomal Sorting Complexes Required for TransportEndosomesFungal ProteinsGreen Fluorescent ProteinsImage Processing, Computer-AssistedNuclear ProteinsProtein BindingProtein Interaction MappingRecombinant Fusion ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTransport VesiclesEndosomal Sorting Complexes Required for TransportFungal ProteinsGreen Fluorescent ProteinsNuclear ProteinsRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSNF7 protein, S cerevisiae

Identifiers

PMID19307607
PMCPMC2674829

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.