Evidence map›Paper›PMID 19307593›Full record

ArticleGenome research2009

Signals of recent positive selection in a worldwide sample of human populations.

Joseph K Pickrell, Graham Coop, John Novembre, Sridhar Kudaravalli, Jun Z Li, Devin Absher, Balaji S Srinivasan, Gregory S Barsh, Richard M Myers, Marcus W Feldman and 1 more

Abstract read
In one paragraph

Article in Genome research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 446 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
446citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

446 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Common variants on 6q16.2, 12q24.31 and 16p13.3 are associated with major depressive disorder.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2018
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Genomic evidence for shared common ancestry of East African hunting-gathering populations and insights into local adaptation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Trial
  6. Trial
  7. Article
  8. Article
  9. Article
  10. Article
  11. Genomic Insights Into Host Shifts BetweenEvolutionary applications · 2026
    Article
  12. Review
  13. Article
  14. Article
  15. Genome analyses suggest recent speciation and postglacial isolation in the Norwegian lemming.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

386 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Joseph K PickrellDepartment of Human Genetics, The University of Chicago, Chicago, IL 60637, USA. pickrell@uchicago.edu
Graham Coop
John Novembre
Sridhar Kudaravalli
Jun Z Li
Devin Absher
Balaji S Srinivasan
Gregory S Barsh
Richard M Myers
Marcus W Feldman
Jonathan K Pritchard

Funding

POPULATION GENETICS THEORYR01GM028016 · NIGMS · STANFORD UNIVERSITY · PI FELDMAN, MARCUS W · 1985 to 2010
$2.5M
Howard Hughes Medical InstituteNIGMS NIH HHS GM 28016NIGMS NIH HHS R01 GM028016
6 · The paper itself

Abstract

Genome-wide scans for recent positive selection in humans have yielded insight into the mechanisms underlying the extensive phenotypic diversity in our species, but have focused on a limited number of populations. Here, we present an analysis of recent selection in a global sample of 53 populations, using genotype data from the Human Genome Diversity-CEPH Panel. We refine the geographic distributions of known selective sweeps, and find extensive overlap between these distributions for populations in the same continental region but limited overlap between populations outside these groupings. We present several examples of previously unrecognized candidate targets of selection, including signals at a number of genes in the NRG-ERBB4 developmental pathway in non-African populations. Analysis of recently identified genes involved in complex diseases suggests that there has been selection on loci involved in susceptibility to type II diabetes. Finally, we search for local adaptation between geographically close populations, and highlight several examples.

Indexed as

Genetics, PopulationSelection, GeneticDiabetes Mellitus, Type 2ErbB ReceptorsGenetic Predisposition to DiseaseGenome, HumanGenome-Wide Association StudyHumansNeuregulinsPhenotypeReceptor, ErbB-4ERBB4 protein, humanErbB ReceptorsNeuregulinsReceptor, ErbB-4

Identifiers

PMID19307593
PMCPMC2675971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.