ArticleNucleic acids research2009
Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.
Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
31 citing papers in PubMed, 47 citations in OpenAlex.
- Comparison of metabolomic reconfiguration between Columbia and Landsberg ecotypes subjected to the combination of high salinity and increased irradiance.BMC plant biology · 2023Article
- The nature and genomic landscape of repetitive DNA classes in Chrysanthemum nankingense shows recent genomic changes.Annals of botany · 2023Article
- The effect of DNA polymorphisms and natural variation on crossover hotspot activity in Arabidopsis hybrids.Nature communications · 2023Article
- Fusarium oxysporum Disrupts Microbiome-Metabolome Networks in Arabidopsis thaliana Roots.Microbiology spectrum · 2022Article
- Quantitative Proteomic Analysis of ER Stress Response Reveals both Common and Specific Features in Two Contrasting Ecotypes ofInternational journal of molecular sciences · 2020Article
- Haplotype-phased genome and evolution of phytonutrient pathways of tetraploid blueberry.GigaScience · 2019Article
- Transposable Elements Contribute to the Adaptation of Arabidopsis thaliana.Genome biology and evolution · 2018Article
- Arabidopsis mutants may represent recombinant introgression lines.BMC research notes · 2018Article
- Where to Cross Over? Defining Crossover Sites in Plants.Frontiers in genetics · 2018Review
- Competition for Chiasma Formation Between Identical and Homologous (But Not Identical) Chromosomes in Synthetic Autotetraploids ofFrontiers in plant science · 2018Article
- DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses.Nature communications · 2016Article
- Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm.The EMBO journal · 2016Article
- Article
- DNA Methylation within Transcribed Regions.Plant physiology · 2015Review
- A transposable element within the Non-canonical telomerase RNA of Arabidopsis thaliana modulates telomerase in response to DNA damage [corrected].PLoS genetics · 2015Article
- Epigenetic regulation of intragenic transposable elements impacts gene transcription in Arabidopsis thaliana.Nucleic acids research · 2015Article
- PAV markers in Sorghum bicolour: genome pattern, affected genes and pathways, and genetic linkage map construction.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Modulating crossover positioning by introducing large structural changes in chromosomes.BMC genomics · 2015Article
- Diversity and evolution of transposable elements in Arabidopsis.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2014Review
- Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes.BMC genomics · 2013Article
Corrections and comments
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Large differences in plant genome sizes are mainly due to numerous events of insertions or deletions (indels). The balance between these events determines the evolutionary direction of genome changes. To address the question of what phenomena trigger these alterations, we compared the genomic sequences of two Arabidopsis thaliana lines, Columbia (Col) and Landsberg erecta (Ler). Based on the resulting alignments large indels (>100 bp) within these two genomes were analysed. There are approximately 8500 large indels accounting for the differences between the two genomes. The genetic basis of their origin was distinguished as three main categories: unequal recombination (Urec)-derived, illegitimate recombination (Illrec)-derived and transposable elements (TE)-derived. A detailed study of their distribution and size variation along chromosomes, together with a correlation analyses, allowed us to demonstrate the impact of particular recombination-based mechanisms on the plant genome evolution. The results show that unequal recombination is not efficient in the removal of TEs within the pericentromeric regions. Moreover, we discovered an unexpectedly high influence of large indels on gene evolution pointing out significant differences between the various gene families. For the first time, we present convincing evidence that somatic events do play an important role in plant genome evolution.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.