Evidence map›Paper›PMID 19301974›Full record

ArticleThe Journal of infectious diseases2009

Methylation regulates hepatitis B viral protein expression.

Perumal Vivekanandan, David Thomas, Michael Torbenson

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of infectious diseases, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 90 citations in OpenAlex.

  1. Review
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  9. Review
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  11. Article
  12. HBV cccDNA and Its Potential as a Therapeutic Target.Journal of clinical and translational hepatology · 2019
    Review
  13. Article
  14. Review
  15. Differences in Cpg Island Distribution Between Subgenotypes of the Hepatitis B Virus Genotype.Medical science monitor : international medical journal of experimental and clinical research · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Update on occult hepatitis B virus infection.World journal of gastroenterology · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Perumal VivekanandanDepartment of Pathology, the Johns Hopkins University School of Medicine, Baltimore, MD 21231, USA.
David Thomas
Michael Torbenson
Johns Hopkins University · US

Funding

The Progression of Hepatitis C Among IDUs with HIVR01DA016078 · NIDA · JOHNS HOPKINS UNIVERSITY · PI BALAGOPAL, ASHWIN, THOMAS, DAVID L · 2002 to 2016
$10.9M
Genetic and epigenetic regulation of Hepatitis B contributes to liver cancerR01DK078686 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI TORBENSON, MICHAEL S · 2008 to 2011
$1.4M
Occult Hepatitis BK08DA016370 · NIDA · JOHNS HOPKINS UNIVERSITY · PI TORBENSON, MICHAEL S · 2003 to 2007
$892k
NIDA NIH HHS K08 DA016370NIDA NIH HHS R01 DA016078NIDDK NIH HHS R01 DK078686
6 · The paper itself

Abstract

backgroundHepatitis B virus (HBV) DNA has been shown to contain CpG islands that are methylated in human tissue, which suggests a role for methylation in regulating viral protein production. However, data are lacking about whether methylation regulates viral gene expression.

methodsTo investigate the hypothesis that methylation of viral DNA regulates viral gene expression, unmethylated, partially methylated, and fully methylated viral DNA was transfected into HepG2 cells. In addition, a new assay was designed that specifically identifies methylated covalently closed circular DNA (cccDNA) in human liver tissue.

resultsTransfection of methylated HBV DNA led to reduced HBV mRNA levels in HepG2 cells, decreased surface and core protein expression in these cells, and decreased secretion of HBV viral proteins into the cell supernatant. These data provide direct evidence that CpG islands regulate gene transcription of HBV. Furthermore, methylated cccDNA was found in tumor and nonneoplastic human liver tissues. Finally, an in vitro equivalent of cccDNA showed decreased viral protein production in HepG2 cells after DNA methylation.

conclusionTaken together, these data demonstrate that methylation of viral CpG islands can regulate viral protein production.

Indexed as

Base SequenceCell Line, TumorDNA MethylationDNA PrimersDNA, ViralEnhancer Elements, GeneticEnzyme-Linked Immunosorbent AssayGene Expression Regulation, ViralHepatitis B, ChronicHepatitis B e AntigensHepatitis B Surface AntigensHepatitis B virusHumansLiver NeoplasmsRegulatory Sequences, Nucleic AcidRNA, MessengerDNA PrimersDNA, ViralHepatitis B e AntigensHepatitis B Surface AntigensRNA, MessengerRNA, ViralViral Proteins

Identifiers

PMID19301974
PMCPMC3032270
OpenAlexW2103458510

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.