Evidence map›Paper›PMID 19300523›Full record

ArticleJournal of biomedicine & biotechnology2009

Identification of IbeR as a stationary-phase regulator in meningitic Escherichia coli K1 that carries a loss-of-function mutation in rpoS.

Feng Chi, Ying Wang, Timothy K Gallaher, Chun-Hua Wu, Ambrose Jong, Sheng-He Huang

Open access · hybridAbstract read
In one paragraph

Article in Journal of biomedicine & biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. The Homoserine DehydrogenaseMicroorganisms · 2026
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  13. Indole affects biofilm formation in bacteria.Indian journal of microbiology · 2010
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Feng ChiSaban Research Institute of Childrens Hospital Los Angeles, Department of Pediatrics, University of Southern California, Los Angeles, CA 90027, USA.
Ying Wang
Timothy K Gallaher
Chun-Hua Wu
Ambrose Jong
Sheng-He Huang
University of Southern California · USChildren's Hospital of Los Angeles · US

Funding

Invasion of C. neoformans into brain endothelial cellsR01NS047599 · NINDS · CHILDREN'S HOSPITAL OF LOS ANGELES · PI JONG, AMBROSE Y · 2004 to 2012
$2.5M
Escherichia coli invasion of brain endothelial cellsR01AI040635 · NIAID · CHILDREN'S HOSPITAL OF LOS ANGELES · PI HUANG, SHENG-HE · 2003 to 2007
$1.2M
NIAID NIH HHS R01 AI040635NIAID NIH HHS R01-AI40635NINDS NIH HHS R01 NS047599NINDS NIH HHS R01-NS047599
6 · The paper itself

Abstract

IbeR is a regulator present in meningitic Escherichia coli strain E44 that carries a loss-of-function mutation in the stationary-phase (SP) regulatory gene rpoS. In order to determine whether IbeR is an SP regulator in E44, two-dimensional gel electrophoresis and LC-MS were used to compare the proteomes of a noninvasive ibeR deletion mutant BR2 and its parent strain E44 in the SP. Four up-regulated (TufB, GapA, OmpA, AhpC) and three down-regulated (LpdA, TnaA, OpmC) proteins in BR2 were identified when compared to E44. All these proteins contribute to energy metabolism or stress resistance, which is related to SP regulation. One of the down-regulated proteins, tryptophanase (TnaA), which is regulated by RpoS in other E. coli strains, is associated with SP regulation via production of a signal molecule indole. Our studies demonstrated that TnaA was required for E44 invasion, and that indole was able to restore the noninvasive phenotype of the tnaA mutant. The production of indole was significantly reduced in BR2, indicating that ibeR is required for the indole production via tnaA. Survival studies under different stress conditions indicated that IbeR contributed to bacteria stress resistance in the SP. Taken together, IbeR is a novel regulator contributing to the SP regulation.

Indexed as

Bacterial ProteinsCells, CulturedElectrophoresis, Gel, Two-DimensionalEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialHumansIndolesMeningitis, Escherichia coliMutationProteomicsSigma FactorS PhaseStress, PhysiologicalTryptophanaseBacterial ProteinsEscherichia coli ProteinsindoleIndolesSigma Factorsigma factor KatF protein, BacteriaTryptophanase

Identifiers

PMID19300523
PMCPMC2655632
OpenAlexW2082907619

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.