Evidence map›Paper›PMID 19299505›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Structure of granzyme C reveals an unusual mechanism of protease autoinhibition.

Dion Kaiserman, Ashley M Buckle, Petra Van Damme, James A Irving, Ruby H P Law, Antony Y Matthews, Tanya Bashtannyk-Puhalovich, Chris Langendorf, Philip Thompson, Joël Vandekerckhove and 3 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Conformational Dynamics of Plasmepsin X during Inhibitor Binding.The journal of physical chemistry. B · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Dion KaisermanDepartment of Biochemistry and Molecular Biology, Monash University, Clayton 3800, Australia.
Ashley M Buckle
Petra Van Damme
James A Irving
Ruby H P Law
Antony Y Matthews
Tanya Bashtannyk-Puhalovich
Chris Langendorf
Philip Thompson
Joël Vandekerckhove
Kris Gevaert
James C Whisstock
Phillip I Bird

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Proteases act in important homeostatic pathways and are tightly regulated. Here, we report an unusual structural mechanism of regulation observed by the 2.5-A X-ray crystal structure of the serine protease, granzyme C. Although the active-site triad residues adopt canonical conformations, the oxyanion hole is improperly formed, and access to the primary specificity (S1) pocket is blocked through a reversible rearrangement involving Phe-191. Specifically, a register shift in the 190-strand preceding the active-site serine leads to Phe-191 filling the S1 pocket. Mutation of a unique Glu-Glu motif at positions 192-193 unlocks the enzyme, which displays chymase activity, and proteomic analysis confirms that activity of the wild-type protease can be released through interactions with an appropriate substrate. The 2.5-A structure of the unlocked enzyme reveals unprecedented flexibility in the 190-strand preceding the active-site serine that results in Phe-191 vacating the S1 pocket. Overall, these observations describe a broadly applicable mechanism of protease regulation that cannot be predicted by template-based modeling or bioinformatic approaches alone.

Indexed as

Amino AcidsAnimalsCatalytic DomainCrystallography, X-RayGranzymesProtein ConformationRodentiaSerine EndopeptidasesSerine Proteinase InhibitorsAmino AcidsGranzymesSerine EndopeptidasesSerine Proteinase Inhibitors

Identifiers

PMID19299505
PMCPMC2666993

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.