Evidence map›Paper›PMID 19299502›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

The cost of gene expression underlies a fitness trade-off in yeast.

Gregory I Lang, Andrew W Murray, David Botstein

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed.

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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gregory I LangLewis-Sigler Institute for Integrative Genomics and the Department of Molecular Biology, Princeton University, Princeton, NJ 08544, USA. glang@princeton.edu
Andrew W Murray
David Botstein

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
THEORETICAL ANALYSIS OF FUNCTIONAL MODULESP50GM068763 · NIGMS · HARVARD UNIVERSITY · PI BENENSON, YAAKOV · 2003 to 2012
$28.9M
Genetics of Functional Interactions in YeastR01GM046406 · NIGMS · STANFORD UNIVERSITY · PI BOTSTEIN, DAVID · 2001 to 2015
$9.5M
FEEDBACK CONTROL OF THE CELL CYCLER01GM043987 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI MURRAY, ANDREW W · 1990 to 2023
$6.4M
FEEDBACK CONTROL OF THE CELL CYCLER37GM043987 · NIGMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI MURRAY, ANDREW W · 1999 to 2009
$4.5M
GENETICS OF FUNCTIONAL INTERACTIONS IN YEASTR37GM046406 · NIGMS · STANFORD UNIVERSITY · PI BOTSTEIN, DAVID · 1991 to 2000
$683k
NIGMS NIH HHS GM046406NIGMS NIH HHS GM06876NIGMS NIH HHS GM071508NIGMS NIH HHS GM43987NIGMS NIH HHS P50 GM068763NIGMS NIH HHS P50 GM071508NIGMS NIH HHS R01 GM043987NIGMS NIH HHS R01 GM046406NIGMS NIH HHS R37 GM043987NIGMS NIH HHS R37 GM046406
6 · The paper itself

Abstract

Natural selection optimizes an organism's genotype within the context of its environment. Adaptations to one environment can decrease fitness in another, revealing evolutionary trade-offs. Here, we show that the cost of gene expression underlies a trade-off between growth rate and mating efficiency in the yeast Saccharomyces cerevisiae. During asexual growth, mutations that eliminate the ability to mate provide an approximately 2% per-generation growth-rate advantage. Some strains, including most laboratory strains, carry an allele of GPA1 (an upstream component of the mating pathway) that increases mating efficiency by approximately 30% per round of mating at the cost of an approximately 1% per-generation growth-rate disadvantage. In addition to demonstrating a trade-off between growth rate and mating efficiency, our results illustrate differences in the selective pressures defining fitness in the laboratory versus the natural environment and show that selection, acting on the cost of gene expression, can optimize expression levels and promote gene loss.

Indexed as

Gene Expression Regulation, FungalSelection, GeneticMutationReproductionSaccharomyces cerevisiae

Identifiers

PMID19299502
PMCPMC2658138

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.