Evidence map›Paper›PMID 19296131›Full record

ArticleHuman genetics2009

Analysis of severely affected patients with dihydropyrimidine dehydrogenase deficiency reveals large intragenic rearrangements of DPYD and a de novo interstitial deletion del(1)(p13.3p21.3).

André B P van Kuilenburg, Judith Meijer, Adri N P M Mul, Raoul C M Hennekam, Jan M N Hoovers, Christine E M de Die-Smulders, Peter Weber, Andrea Capone Mori, Jörgen Bierau, Brian Fowler and 10 more

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Article in Human genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 61 citations in OpenAlex.

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  6. Importance of RareFrontiers in pharmacology · 2022
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  7. A rigorousFrontiers in molecular neuroscience · 2022
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  9. Article
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  12. Article
  13. Review
  14. Review
  15. Article
  16. Inborn errors of pyrimidine metabolism: clinical update and therapy.Journal of inherited metabolic disease · 2014
    Article
  17. Article
  18. Article
  19. Article
  20. Clinical review of genetic epileptic encephalopathies.European journal of medical genetics · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 10 institutions in 4 countries.

André B P van KuilenburgDepartment of Clinical Chemistry, Emma Children's Hospital, Academic Medical Center, University of Amsterdam, Amsterdam, The Netherlands. a.b.vankuilenburg@amc.uva.nl
Judith Meijer
Adri N P M Mul
Raoul C M Hennekam
Jan M N Hoovers
Christine E M de Die-Smulders
Peter Weber
Andrea Capone Mori
Jörgen Bierau
Brian Fowler
Klaus Macke
Jörn Oliver Sass
Rutger Meinsma
Julia B Hennermann
Peter Miny
Lida Zoetekouw
Raymon Vijzelaar
Joost Nicolai
Bauke Ylstra
M Estela Rubio-Gozalbo
Maastricht University Medical Centre · NLAcademic Medical Center · NLUniversity Children’s Hospital Basel · CHUniversity of Amsterdam · NLAmsterdam UMC Location VUmc · NLCharité - Universitätsmedizin Berlin · DEEmma Kinderziekenhuis · NLKantonsspital Aarau · CHMRC Holland (Netherlands) · NLRheinhessen-Fachklinik Mainz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dihydropyrimidine dehydrogenase (DPD) deficiency is an infrequently described autosomal recessive disorder of the pyrimidine degradation pathway and can lead to mental and motor retardation and convulsions. DPD deficiency is also known to cause a potentially lethal toxicity following administration of the antineoplastic agent 5-fluorouracil. In an ongoing study of 72 DPD deficient patients, we analysed the molecular background of 5 patients in more detail in whom initial sequence analysis did not reveal pathogenic mutations. In three patients, a 13.8 kb deletion of exon 12 was found and in one patient a 122 kb deletion of exon 14-16 of DPYD. In the fifth patient, a c.299_302delTCAT mutation in exon 4 was found and also loss of heterozygosity of the entire DPD gene. Further analysis demonstrated a de novo deletion of approximately 14 Mb of chromosome 1p13.3-1p21.3, which includes DPYD. Haploinsufficiency of NTNG1, LPPR4, GPSM2, COL11A1 and VAV3 might have contributed to the severe psychomotor retardation and unusual craniofacial features in this patient. Our study showed for the first time the presence of genomic deletions affecting DPYD in 7% (5/72) of all DPD deficient patients. Therefore, screening of DPD deficient patients for genomic deletions should be considered.

Indexed as

Gene RearrangementSequence DeletionBase SequenceChild, PreschoolChromosomes, Human, Pair 1Comparative Genomic HybridizationDihydropyrimidine Dehydrogenase DeficiencyDihydrouracil Dehydrogenase (NADP)DNA Mutational AnalysisExonsFemaleHumansInfantIn Situ Hybridization, FluorescenceMaleMolecular Sequence DataDihydrouracil Dehydrogenase (NADP)Pyrimidines

Identifiers

PMID19296131
OpenAlexW2143024138

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.