Evidence map›Paper›PMID 19295613›Full record

ArticleThe Journal of investigative dermatology2009

Distinguishing mouse strains by proteomic analysis of pelage hair.

Robert H Rice, David M Rocke, Hua-Sheng Tsai, Kathleen A Silva, Young Jin Lee, John P Sundberg

Registry-linked trialAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT01841268 (Skin Lipid Profiles in Term and Preterm Infants), which is not on this map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT01841268 completednot on this mapstarted 2010, after this paper: background citation

Skin Lipid Profiles in Term and Preterm Infants

Typeobservational_patient_registrySponsorUniversity of California, DavisRan2010 to 2016Enrolled25ConditionsPreterm Infants
3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Environmental pro-oxidants induce altered envelope protein profiles in human keratinocytes.Toxicological sciences : an official journal of the Society of Toxicology · 2023
    Article
  5. Article
  6. Article
  7. Deimination and Peptidylarginine Deiminases in Skin Physiology and Diseases.International journal of molecular sciences · 2020
    Review
  8. Review
  9. Article
  10. Alopecia areata.Nature reviews. Disease primers · 2017
    Review
  11. Article
  12. Article
  13. Article
  14. Chicken corneocyte cross-linked proteome.Journal of proteome research · 2013
    Article
  15. Article
  16. Article
  17. Proteomic analysis of human nail plate.Journal of proteome research · 2010
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Robert H RiceDepartment of Environmental Toxicology, University of California, Davis, California 95616-8588, USA. rhrice@ucdavis.edu
David M Rocke
Hua-Sheng Tsai
Kathleen A Silva
Young Jin Lee
John P Sundberg

Funding

Workshop on Environmental Technology Transfer and EntrepreneurshipP42ES004699 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI HAMMOCK, BRUCE D · 1987 to 2021
$50.1M
ROLES OF HOX GENES IN SKIN &HAIR FOLLICLE DEVELOPMENTR01AR047204 · NIAMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI AWGULEWITSCH, ALEXANDER · 2000 to 2010
$2.2M
Methods for Analysis of High Throughput Assay DataR01HG003352 · NHGRI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ROCKE, DAVID M. · 2006 to 2008
$658k
NHGRI NIH HHS R01 HG003352NHGRI NIH HHS R01-HG003352NIAMS NIH HHS AR047204NIAMS NIH HHS R01 AR047204NIEHS NIH HHS 1 P42 ES04699NIEHS NIH HHS P42 ES004699
6 · The paper itself

Abstract

AKR/J mice display a hair interior defect (hid) phenotype for which the molecular basis is unknown. To investigate the application of hair-shaft proteomics to the study of such diseases, pelage from AKR/J and two other mouse strains without this defect was analyzed by shotgun proteomics. The results permitted the identification of 111 proteins from tryptic digests of total hair from AKR/J-hid/hid mice, which were predominantly keratins (Krts) and Krt-associated proteins (Krtaps). From the non-solubilizable (crosslinked) fraction of the hair remaining after extensive detergent extraction, 58 proteins were identified. The majority were Krts and Krtaps, but junctional and other membrane proteins, cytoplasmic proteins, and histones were also identified. The results indicate the incorporation of a multitude of proteins into highly crosslinked material. Comparison of unique peptides generated among hair samples from AKR/J-hid/hid, FVB/NJ+/+, and LP/J+/+ mice indicated that these inbred strains could be distinguished by their proteomic patterns. Transmission electron microscopy after mild treatment in detergent and reducing agent permitted the visualization of projections of cortex cells, with characteristic filament patterns, into adjoining medulla cells. Hair shafts from AKR/J mice were deficient in these projections and also exhibited relatively low levels of trichohyalin, a possible contributor to or marker for the hid phenotype.

Indexed as

AnimalsHairKeratinsKeratins, Hair-SpecificMiceMice, Inbred AKRMicroscopy, Electron, TransmissionMutationProteomicsKeratinsKeratins, Hair-Specific

Identifiers

PMID19295613
PMCPMC2853740

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.