Evidence map›Paper›PMID 19295541›Full record

ArticleGenes and immunity2009

Extended IL10 haplotypes and their association with HIV progression to AIDS.

T K Oleksyk, S Shrestha, A L Truelove, J J Goedert, S M Donfield, J Phair, S Mehta, S J O'Brien, M W Smith

Open access · greenAbstract read
In one paragraph

Article in Genes and immunity, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

  1. Review
  2. Short Communication: Genetic Variation in HumanAIDS research and human retroviruses · 2021
    Article
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  11. A case-control study reveals immunoregulatory gene haplotypes that influence inhibitor risk in severe haemophilia A.Haemophilia : the official journal of the World Federation of Hemophilia · 2011
    Article
  12. Review
  13. Article
  14. Article
  15. Effect of host genetics on incidence of HIV neuroretinal disorder in patients with AIDS.Journal of acquired immune deficiency syndromes (1999) · 2010
    Article
  16. Review
  17. Review
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 1 country.

T K OleksykLaboratory of Genomic Diversity, and Basic Research Program, Science Applications International Corporation-Frederick, National Cancer Institute at Frederick, Frederick, MD 21702, USA.
S Shrestha
A L Truelove
J J Goedert
S M Donfield
J Phair
S Mehta
S J O'Brien
M W Smith
Science Applications International Corporation (United States) · USDivision of Cancer Epidemiology and GeneticsJohns Hopkins University · USNational Cancer Institute · USNorthwestern University · USRho (United States) · USUniversity of Alabama at Birmingham · US

Funding

Rapid Analysis of Single Nucleotide Polymorphism Genotypes in AIDS CohortsZIABC010317 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI O'BRIEN, STEPHEN J · 2009 to 2011
$3.2M
NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

Interleukin-10 (IL-10) is a pleiotropic cytokine with both immunosuppressive and immunostimulatory functions. Its roles in infections and autoimmunity may have resulted in selective pressures on polymorphisms within the gene, leading to genomic coexistence of several semi-conserved haplotypes involved with diverse pathogen interactions during genomic evolution. Previous studies focused either exclusively on promoter haplotypes or on individual SNPs. We genotyped 21 single nucleotide polymorphisms in the human IL10 gene and examined this variation compared to other mammalian species sequences. Haplotype heterogeneity in human populations is centered around 'classic' 'proximal' promoter polymorphisms: -592, -819 and -1082. High-producing GCC haplotypes are by far the most numerous and diverse group, the intermediate IL-10 producing ACC-inclusive haplotypes seem to be related most closely to the ancestral haplotype, and the ATA-inclusive haplotypes cluster a separate branch with strong bootstrap support. We looked at associations of corresponding haplotypes with HIV progression. A haplotype trend regression confirmed that individuals carrying the low-producing ATA-inclusive haplotypes in European Americans progress to AIDS faster, and most likely explain the role of IL10. Our findings are consistent with the hypothesis that existing polymorphisms in this gene may reflect a balance of historic adaptive responses to autoimmune, infectious and other disease agents.

Indexed as

HIV-1Acquired Immunodeficiency SyndromeAnimalsCohort StudiesDisease ProgressionGene FrequencyGenetic Predisposition to DiseaseGenotypeHaplotypesHumansInterleukin-10PhylogenyPolymorphism, Single NucleotidePromoter Regions, GeneticInterleukin-10

Identifiers

PMID19295541
PMCPMC3664918
OpenAlexW1977555330

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.