Evidence map›Paper›PMID 19291297›Full record

ArticleProteome science2009

Discovery and identification of potential biomarkers of pediatric acute lymphoblastic leukemia.

Linan Shi, Jun Zhang, Peng Wu, Kai Feng, Jing Li, Zhensheng Xie, Peng Xue, Tanxi Cai, Ziyou Cui, Xiulan Chen and 3 more

Open access · goldAbstract read
In one paragraph

Article in Proteome science, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 55 citations in OpenAlex.

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  18. Purification, identification and profiling of serum amyloid A proteins from sera of advanced-stage cancer patients.Journal of chromatography. B, Analytical technologies in the biomedical and life sciences · 2012
    Article
  19. Review
  20. Comparative proteomics in acute myeloid leukemia.Contemporary oncology (Poznan, Poland) · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Linan Shi *Proteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Jun Zhang *Center for Experimental Medicine, 306 Hospital of PLA, Beijing 100101, PR China.
Peng WuProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Kai FengCenter for Experimental Medicine, 306 Hospital of PLA, Beijing 100101, PR China.
Jing LiProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Zhensheng XieProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Peng XueProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Tanxi CaiProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Ziyou CuiProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Xiulan ChenProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Junjie HouProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Jianzhong ZhangCenter for Experimental Medicine, 306 Hospital of PLA, Beijing 100101, PR China.
Fuquan YangProteomic Platform, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, PR China.
Institute of Biophysics · CNChinese Academy of Sciences · CNPLA 306 Hospital · CNUniversity of Chinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAcute lymphoblastic leukemia (ALL) is a common form of cancer in children. Currently, bone marrow biopsy is used for diagnosis. Noninvasive biomarkers for the early diagnosis of pediatric ALL are urgently needed. The aim of this study was to discover potential protein biomarkers for pediatric ALL.

methodsNinety-four pediatric ALL patients and 84 controls were randomly divided into a "training" set (45 ALL patients, 34 healthy controls) and a test set (49 ALL patients, 30 healthy controls and 30 pediatric acute myeloid leukemia (AML) patients). Serum proteomic profiles were measured using surface-enhanced laser desorption/ionization-time-of-flight mass spectroscopy (SELDI-TOF-MS). A classification model was established by Biomarker Pattern Software (BPS). Candidate protein biomarkers were purified by HPLC, identified by LC-MS/MS and validated using ProteinChip immunoassays.

resultsA total of 7 protein peaks (9290 m/z, 7769 m/z, 15110 m/z, 7564 m/z, 4469 m/z, 8937 m/z, 8137 m/z) were found with differential expression levels in the sera of pediatric ALL patients and controls using SELDI-TOF-MS and then analyzed by BPS to construct a classification model in the "training" set. The sensitivity and specificity of the model were found to be 91.8%, and 90.0%, respectively, in the test set. Two candidate protein peaks (7769 and 9290 m/z) were found to be down-regulated in ALL patients, where these were identified as platelet factor 4 (PF4) and pro-platelet basic protein precursor (PBP). Two other candidate protein peaks (8137 and 8937 m/z) were found up-regulated in the sera of ALL patients, and these were identified as fragments of the complement component 3a (C3a).

conclusionPlatelet factor (PF4), connective tissue activating peptide III (CTAP-III) and two fragments of C3a may be potential protein biomarkers of pediatric ALL and used to distinguish pediatric ALL patients from healthy controls and pediatric AML patients. Further studies with additional populations or using pre-diagnostic sera are needed to confirm the importance of these findings as diagnostic markers of pediatric ALL.

Identifiers

PMID19291297
PMCPMC2662805
OpenAlexW1985946739

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.