Evidence map›Paper›PMID 19289059›Full record

ArticleBiophysical journal2009

The effects of ADF/cofilin and profilin on the conformation of the ATP-binding cleft of monomeric actin.

Roland Kardos, Kinga Pozsonyi, Elisa Nevalainen, Pekka Lappalainen, Miklós Nyitrai, Gábor Hild

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. A nucleotide state-sensing region on actin.The Journal of biological chemistry · 2010
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Roland KardosUniversity of Pécs, Faculty of Medicine, Department of Biophysics, Pécs, Hungary.
Kinga Pozsonyi
Elisa Nevalainen
Pekka Lappalainen
Miklós Nyitrai
Gábor Hild
University of Pecs · HUUniversity of Helsinki · FI

Funding

Wellcome Trust 079003
6 · The paper itself

Abstract

Actin depolymerizing factor (ADF)/cofilin and profilin are small actin-binding proteins, which have central roles in cytoskeletal dynamics in all eukaryotes. When bound to an actin monomer, ADF/cofilins inhibit the nucleotide exchange, whereas most profilins accelerate the nucleotide exchange on actin monomers. In this study the effects of ADF/cofilin and profilin on the accessibility of the actin monomer's ATP-binding pocket was investigated by a fluorescence spectroscopic method. The fluorescence of the actin bound epsilon-ATP was quenched with a neutral quencher (acrylamide) in steady-state and time dependent experiments, and the data were analyzed with a complex form of the Stern-Volmer equation. The experiments revealed that in the presence of ADF/cofilin the accessibility of the bound epsilon-ATP decreased, indicating a closed and more compact ATP-binding pocket induced by the binding of ADF/cofilin. In the presence of profilin the accessibility of the bound epsilon-ATP increased, indicating a more open and approachable protein matrix around the ATP-binding pocket. The results of the fluorescence quenching experiments support a structural mechanism regarding the regulation of the nucleotide exchange on actin monomers by ADF/cofilin and profilin.

Indexed as

Actin Depolymerizing FactorsActinsAdenosine TriphosphateAlgorithmsAnimalsBinding SitesEthenoadenosine TriphosphateFungal ProteinsProfilinsRabbitsRecombinant Fusion ProteinsSpectrometry, FluorescenceActin Depolymerizing FactorsActinsAdenosine TriphosphateEthenoadenosine TriphosphateFungal ProteinsProfilinsRecombinant Fusion Proteins

Identifiers

PMID19289059
PMCPMC2865994
OpenAlexW2044494827

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.