Evidence map›Paper›PMID 19287509›Full record

ArticleMolecular medicine (Cambridge, Mass.)

Genome-wide association study of determinants of anti-cyclic citrullinated peptide antibody titer in adults with rheumatoid arthritis.

Jing Cui, Kimberly E Taylor, Anita L Destefano, Lindsey A Criswell, Elena S Izmailova, Alex Parker, Ronenn Roubenoff, Robert M Plenge, Michael E Weinblatt, Nancy A Shadick and 1 more

Open access · goldAbstract read
In one paragraph

Article in Molecular medicine (Cambridge, Mass.). The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Genetic and environmental risk factors for rheumatoid arthritis.Best practice & research. Clinical rheumatology · 2017
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. The rheumatoid arthritis HLA-DRB1 shared epitope.Current opinion in rheumatology · 2010
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Jing CuiDivision of Rheumatology, Immunology & Allergy, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts 02115, USA. jcui3@partners.org
Kimberly E Taylor
Anita L Destefano
Lindsey A Criswell
Elena S Izmailova
Alex Parker
Ronenn Roubenoff
Robert M Plenge
Michael E Weinblatt
Nancy A Shadick
Elizabeth W Karlson
Brigham and Women's Hospital · USHarvard University · USMillennium Engineering and Integration (United States) · USUniversity of California, San Francisco · USBiogen (United States) · USBoston University · US

Funding

ZD1839 FOR MALIGNANT ASTROCYTOMA OR GLIOBLASTOMA AND MENINGIOMAM01RR000079 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KESSLER, DAVID A · 1985 to 2006
$26.0M
Trial of risk mangement for prevention of accelerated atherosclerosis in SLEP60AR047782 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI KARLSON, ELIZABETH W · 2001 to 2016
$18.8M
AN NCRR CENTER FOR HIGH THROUGHPUT SNP GENOTYPING AND ANALYSIS: GAIN NETWORKU54RR020278 · NCRR · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY · 2004 to 2008
$14.4M
Novel Biomarkers and Prediction Models for Rheumatoid ArthritisR01AR049880 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI COSTENBADER, KAREN H, KARLSON, ELIZABETH W · 2003 to 2018
$8.7M
NARAC The Genetics of Rheumatoid ArthritisR01AR044422 · NIAMS · NORTH SHORE UNIVERSITY HOSPITAL · PI GREGERSEN, PETER K. · 1997 to 2011
$6.0M
Dissecting the HLA contribution to Rheumatoid ArthritisR01AI065841 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CRISWELL, LINDSEY ANN · 2006 to 2010
$3.2M
Mapping HIV/AIDS genes with haplotype-based strategiesK08AI055314 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI PLENGE, ROBERT M · 2004 to 2008
$585k
The Genetic Epidemiology of RA and SLEK24AR002175 · NIAMS · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI CRISWELL, LINDSEY ANN · 2001 to 2005
$555k
CONTINUATION OF THE GENETICS OF RHEUMATOID ARTHRITIS-264022263N01AR022263 · NIAMS · NORTH SHORE-LONG ISLAND JEWISH · 2002 to 2005
–
NCRR NIH HHS M01 RR000079NCRR NIH HHS M01 RR-00079NCRR NIH HHS U54 RR020278NIAID NIH HHS K08 AI055314NIAID NIH HHS K08 AI55314-3NIAID NIH HHS R01 AI065841NIAMS NIH HHS K24 AR002175NIAMS NIH HHS K24 AR02175NIAMS NIH HHS K24 AR0524-01NIAMS NIH HHS N01-AR-2-2263NIAMS NIH HHS P60 AR047782NIAMS NIH HHS R01 AR044422NIAMS NIH HHS R01 AR049880NIAMS NIH HHS R01-AR44422NIAMS NIH HHS R01 AR49880
6 · The paper itself

Abstract

We carried out a genome-wide association study of genetic predictors of anti-cyclic citrullinated peptide antibody (anti-CCP) level in 531 self-reported non-Hispanic Caucasian Rheumatoid Arthritis (RA) patients enrolled in the Brigham Rheumatoid Arthritis Sequential Study (BRASS). For replication, we then analyzed 289 single nucleotide polymorphisms (SNPs) with P < 0.001 in BRASS in an independent population of 849 RA patients from the North American Rheumatoid Arthritis Consortium (NARAC). BRASS and NARAC samples were genotyped using the Affymetrix 100K and Illumina 550K platforms respectively. Association between SNPs and anti-CCP titer was tested using general linear models. The five most significant SNPs from BRASS all were within the major histocompatibility complex (MHC) region (P < or = 3.5 x 10(-6)). After controlling for the human leukocyte antigen shared epitope (HLA-SE), the top SNPs still yielded P values < 0.0002. In NARAC, a single SNP from the MHC region near BTNL2 and HLA-DRA, rs1980493 (r(2) = 0.85 with the top five SNPs from BRASS), was associated significantly with CCP titer (P = 6.1 x 10(-5)) even after adjustment for the HLA-SE (P = 0.0002). The top SNPs found in BRASS and NARAC had r(2) = 0.46 and 0.64, respectively, to HLA-DRB1 DR3 alleles. These results confirm that the most significant genome region affecting anti-CCP titers in RA is the MHC region. We identified a SNP in moderate linkage disequilibrium (LD) with HLA-DR3, which may influence anti-CCP titer independently of the HLA-SE.

Indexed as

Genome-Wide Association StudyAdultAgedAntibodiesArthritis, RheumatoidButyrophilinsFemaleGenotypeHLA-DR alpha-ChainsHLA-DR AntigensHLA-DRB1 ChainsHumansMajor Histocompatibility ComplexMaleMembrane GlycoproteinsMiddle AgedAntibodiesBTNL2 protein, humanButyrophilinscyclic citrullinated peptideHLA-DR alpha-ChainsHLA-DR AntigensHLA-DRB1 ChainsMembrane GlycoproteinsPeptides, Cyclic

Identifiers

PMID19287509
PMCPMC2654848
OpenAlexW30618619

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.