Evidence map›Paper›PMID 19287191›Full record

ArticleExperimental & molecular medicine2009

Genetic and expression alterations in association with the sarcomatous change of cholangiocarcinoma cells.

Hee-Jung Yoo, Bo-Ra Yun, Jung-Hee Kwon, Hyuk-Soo Ahn, Min-A Seol, Mi-Jin Lee, Goung-Ran Yu, Hee-Chul Yu, BeeHak Hong, KwanYong Choi and 1 more

Open access · goldAbstract read
In one paragraph

Article in Experimental & molecular medicine, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

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  14. Carcinosarcoma of the Gallbladder: A Rare Tumor.World journal of oncology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Hee-Jung YooDivision of Gastroenterology and Hepatology, Department of Internal Medicine, Institute for Medical Sciences, Chonbuk National University Medical School and Hospital, Jeonju 561-712, Korea.
Bo-Ra Yun
Jung-Hee Kwon
Hyuk-Soo Ahn
Min-A Seol
Mi-Jin Lee
Goung-Ran Yu
Hee-Chul Yu
BeeHak Hong
KwanYong Choi
Dae-Ghon Kim
Pohang University of Science and Technology · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cholangiocarcinoma (CC) is an intrahepatic bile duct carcinoma with a high mortality rate and a poor prognosis. Sarcomatous change/epithelial mesenchymal transition (EMT) of CC frequently leads to aggressive intrahepatic spread and metastasis. The aim of this study was to identify the genetic alterations and gene expression pattern that might be associated with the sarcomatous change in CC. Previously, we established 4 human CC cell lines (SCK, JCK1, Cho-CK, and Choi-CK). In the present study, we characterized a typical sarcomatoid phenotype of SCK, and classified the other cell lines according to tumor cell differentiation (a poorly differentiated JCK, a moderately differentiated Cho-CK, and a well differentiated Choi-CK cells), both morphologically and immunocytologically. We further analyzed the genetic alterations of two tumor suppressor genes (p53 and FHIT) and the expression of Fas/FasL gene, well known CC-related receptor and its ligand, in these four CC cell lines. The deletion mutation of p53 was found in the sarcomatoid SCK cells. These cells expressed much less Fas/FasL mRNAs than did the other ordinary CC cells. We further characterize the gene expression pattern that is involved in the sarcomatous progression of CC, using cDNA microarrays that contained 18,688 genes. Comparison of the expression patterns between the sarcomatoid SCK cells and the differentiated Choi-CK cells enabled us to identify 260 genes and 247 genes that were significantly over-expressed and under-expressed, respectively. Northern blotting of the 14 randomly selected genes verified the microarray data, including the differential expressions of the LGALS1, TGFBI, CES1, LDHB, UCHL1, ASPH, VDAC1, VIL2, CCND2, S100P, CALB1, MAL2, GPX1, and ANXA8 mRNAs. Immunohistochemistry also revealed in part the differential expressions of these gene proteins. These results suggest that those genetic and gene expression alterations may be relevant to the sarcomatous change/EMT in CC cells.

Indexed as

Gene Expression ProfilingAcid Anhydride HydrolasesAnimalsBis(5'-adenosyl)triphosphataseCell Line, TumorCholangiocarcinomaFemaleHumansMiceMice, Inbred BALB CMutationNeoplasm ProteinsOligonucleotide Array Sequence AnalysisSarcomaTumor Suppressor Protein p53Acid Anhydride HydrolasesBis(5'-adenosyl)triphosphataseNeoplasm ProteinsTumor Suppressor Protein p53

Identifiers

PMID19287191
PMCPMC2679331
OpenAlexW1968188583

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.