Evidence map›Paper›PMID 19286985›Full record

ArticleEukaryotic cell2009

Fungal functional genomics: tunable knockout-knock-in expression and tagging strategies.

Luis F Larrondo, Hildur V Colot, Christopher L Baker, Jennifer J Loros, Jay C Dunlap

Abstract readEvaluation Study
In one paragraph

Article in Eukaryotic cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Rhythmic Nuclear Import Mediated by Importins Regulates thebioRxiv : the preprint server for biology · 2026
    Article
  3. Review
  4. Article
  5. Identification and Characterization of an Antifungal GeneInternational journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
  8. An Inactivation Switch Enables Rhythms in aInternational journal of molecular sciences · 2019
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Circadian rhythms synchronize mitosis in Neurospora crassa.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  15. Article
  16. Microtubule-based transport in filamentous fungi.Current opinion in microbiology · 2012
    Review
  17. Article
  18. The circadian clock of Neurospora crassa.FEMS microbiology reviews · 2012
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Luis F LarrondoDepartment of Genetics, Dartmouth Medical School, Hanover, NH 03755, USA.
Hildur V Colot
Christopher L Baker
Jennifer J Loros
Jay C Dunlap

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
Identification and Analysis of Circadian Clock-Controlled GenesR01GM083336 · NIGMS · DARTMOUTH COLLEGE · PI LOROS, JENNIFER J. · 2008 to 2015
$5.7M
GENETIC AND MOLECULAR DISSECTION OF THE NEUROSPORA CLOCKR01GM034985 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 1986 to 2015
$5.7M
GENETIC AND MOLECULAR DISSECTION OF THE NEUSPORA CLOCKR37GM034985 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C · 1998 to 2007
$4.4M
NIGMS NIH HHS P01 GM068087NIGMS NIH HHS R01 GM034985NIGMS NIH HHS R01 GM083336NIGMS NIH HHS R01 GM34985NIGMS NIH HHS R37 GM034985
6 · The paper itself

Abstract

Strategies for promoting high-efficiency homologous gene replacement have been developed and adopted for many filamentous fungal species. The next generation of analysis requires the ability to manipulate gene expression and to tag genes expressed from their endogenous loci. Here we present a suite of molecular tools that provide versatile solutions for fungal high-throughput functional genomics studies based on locus-specific modification of any target gene. Additionally, case studies illustrate caveats to presumed overexpression constructs. A tunable expression system and different tagging strategies can provide valuable phenotypic information for uncharacterized genes and facilitate the analysis of essential loci, an emerging problem in systematic deletion studies of haploid organisms.

Indexed as

Genome, FungalFungiGene Expression Regulation, FungalGene Knockdown TechniquesGene Knock-In TechniquesGenomics

Identifiers

PMID19286985
PMCPMC2681610

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.