Evidence map›Paper›PMID 19285330›Full record

ArticleVirology2009

Identification and functional characterization of the left origin of lytic replication of murine gammaherpesvirus 68.

Danyang Gong, Jing Qi, Vaithilingaraja Arumugaswami, Ren Sun, Hongyu Deng

Open access · greenAbstract read
In one paragraph

Article in Virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. RNF213 modulates γ-herpesvirus infection and reactivation via targeting the viral Replication and Transcription Activator.Proceedings of the National Academy of Sciences of the United States of America · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Danyang GongCenter for Infection and Immunity, Institute of Biophysics, Chinese Academy of Sciences, Chaoyang District, Beijing, P.R. China.
Jing Qi
Vaithilingaraja Arumugaswami
Ren Sun
Hongyu Deng
University of California, Los Angeles · USChinese Academy of Sciences · CNInstitute of Biophysics · CN

Funding

A Novel Herpesviral Vector for Oral Gene DeliveryK22DE015612 · NIDCR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DENG, HONGYU · 2004 to 2008
$621k
NIDCR NIH HHS DE15612NIDCR NIH HHS K22 DE015612
6 · The paper itself

Abstract

Murine gammaherpesvirus 68 (MHV-68) replicates robustly in cell culture, providing a model for studying viral genome replication during de novo infection of tumor-associated herpesviruses. We have previously identified a 1.25-kb origin of lytic replication (oriLyt) for MHV-68. To further investigate the molecular mechanism of viral genome replication, we first fine-mapped essential cis-elements from this oriLyt fragment using a transposon-mediated high-density mutagenesis method. The result provided information for us to identify a second oriLyt located towards the left end of MHV-68 genome using a de novo infection-replication assay. We further characterized this left oriLyt by scanning deletion analysis and site-directed mutations, and showed that several CCAAT motifs are essential for oriLyt function, whereas an AT-rich region enhances replication. However, GC-rich repeats are not important cis-element. Moreover, we identified a cellular transcription factor, NF-Y, which binds to CCAAT boxes in EMSA and associates with oriLyt in ChIP assay. Using a dominant negative expression plasmid, we demonstrated that NF-Y plays an important role in mediating MHV-68 genome replication during de novo infection.

Indexed as

Replication OriginVirus ReplicationAnimalsBase SequenceCCAAT-Binding FactorCell LineDNA ReplicationDNA, ViralGenome, ViralHerpesviridae InfectionsHumansMolecular Sequence DataMutationRegulatory Elements, TranscriptionalRhadinovirusSequence AlignmentCCAAT-Binding FactorDNA, Viral

Identifiers

PMID19285330
PMCPMC2715915
OpenAlexW2119634865

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.