Evidence map›Paper›PMID 19285084›Full record

ArticleJournal of molecular biology2009

Crystal structures of the histo-aspartic protease (HAP) from Plasmodium falciparum.

Prasenjit Bhaumik, Huogen Xiao, Charity L Parr, Yoshiaki Kiso, Alla Gustchina, Rickey Y Yada, Alexander Wlodawer

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 57 citations in OpenAlex.

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  5. Methods Used to Investigate theFrontiers in cellular and infection microbiology · 2021
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  19. Structural studies of vacuolar plasmepsins.Biochimica et biophysica acta · 2012
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Prasenjit BhaumikProtein Structure Section, Macromolecular Crystallography Laboratory, National Cancer Institute, Frederick, MD 21702, USA.
Huogen Xiao
Charity L Parr
Yoshiaki Kiso
Alla Gustchina
Rickey Y Yada
Alexander Wlodawer
National Cancer Institute · USUniversity of Guelph · CAKyoto Pharmaceutical University · JP

Funding

Protein StructureZIABC010348 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WLODAWER, ALEXANDER · 2009 to 2025
$27.5M
PROTEIN STRUCTUREZ01BC010348 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI WLODAWER, ALEXANDER · 2000 to 2008
$3.2M
Intramural NIH HHS Z01 BC010348
6 · The paper itself

Abstract

The structures of recombinant histo-aspartic protease (HAP) from malaria-causing parasite Plasmodium falciparum as apoenzyme and in complex with two inhibitors, pepstatin A and KNI-10006, were solved at 2.5-, 3.3-, and 3.05-A resolutions, respectively. In the apoenzyme crystals, HAP forms a tight dimer not seen previously in any aspartic protease. The interactions between the monomers affect the conformation of two flexible loops, the functionally important "flap" (residues 70-83) and its structural equivalent in the C-terminal domain (residues 238-245), as well as the orientation of helix 225-235. The flap is found in an open conformation in the apoenzyme. Unexpectedly, the active site of the apoenzyme contains a zinc ion tightly bound to His32 and Asp215 from one monomer and to Glu278A from the other monomer, with the coordination of Zn resembling that seen in metalloproteases. The flap is closed in the structure of the pepstatin A complex, whereas it is open in the complex with KNI-10006. Although the binding mode of pepstatin A is significantly different from that in other pepsin-like aspartic proteases, its location in the active site makes unlikely the previously proposed hypothesis that HAP is a serine protease. The binding mode of KNI-10006 is unusual compared with the binding of other inhibitors from the KNI series to aspartic proteases. The novel features of the HAP active site could facilitate design of specific inhibitors used in the development of antimalarial drugs.

Indexed as

Amino Acid SequenceAnimalsAspartic Acid EndopeptidasesCatalytic DomainCrystallography, X-RayDimerizationEnzyme InhibitorsModels, MolecularMolecular Sequence DataOligopeptidesPepstatinsPlasmodium falciparumProtein BindingProtein Structure, QuaternaryProtozoan ProteinsSequence AlignmentAspartic Acid EndopeptidasesEnzyme InhibitorsKNI 10006OligopeptidespepstatinPepstatinsProtozoan ProteinsZinc

Identifiers

PMID19285084
PMCPMC2702178
OpenAlexW2104439228

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.