Evidence map›Paper›PMID 19284783›Full record

ArticleJournal of proteome research2009

Immunologic glycosphingolipidomics and NKT cell development in mouse thymus.

Yunsen Li, Prakash Thapa, David Hawke, Yuji Kondo, Keiko Furukawa, Koichi Furukawa, Fong-Fu Hsu, Dietlind Adlercreutz, Joel Weadge, Monica M Palcic and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of proteome research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Review
  3. Role of Globotriaosylceramide in Physiology and Pathology.Frontiers in molecular biosciences · 2022
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Mass spectrometric analysis of glycosphingolipid antigens.Journal of visualized experiments : JoVE · 2013
    Article
  9. Review
  10. Role of glycosphingolipids in dendritic cell-mediated HIV-1 trans-infection.Advances in experimental medicine and biology · 2013
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Yunsen LiDepartment of Melanoma Medical Oncology, Mass Spectrometry Core Facility, The University of Texas M.D. Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas 77054, USA.
Prakash Thapa
David Hawke
Yuji Kondo
Keiko Furukawa
Koichi Furukawa
Fong-Fu Hsu
Dietlind Adlercreutz
Joel Weadge
Monica M Palcic
Peng G Wang
Steven B Levery
Dapeng Zhou
The University of Texas MD Anderson Cancer Center · US

Funding

University of Texas M.D. Anderson Cancer SPORE-LeukemiaP50CA100632 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DRAETTA, GIULIO FRANCESCO · 2003 to 2023
$43.7M
CORE--PROTEOMICSP20RR016459 · NCRR · UNIVERSITY OF NEW HAMPSHIRE · PI REINHOLD, VERNON NYE · 2001 to 2003
$5.6M
NEW METHODS FOR QUANTITATIVE GLYCOSPHINGOLIPIDOMICSR21RR020355 · NCRR · UNIVERSITY OF NEW HAMPSHIRE · PI LEVERY, STEVEN B · 2004 to 2005
$393k
NCI NIH HHS 1P50 CA100632-04NCI NIH HHS P50 CA100632NCRR NIH HHS P20 RR016459NCRR NIH HHS P20 RR16459NCRR NIH HHS R21 RR020355NCRR NIH HHS R21 RR20355
6 · The paper itself

Abstract

Invariant NKT cells are a hybrid cell type of Natural Killer cells and T cells, whose development is dependent on thymic positive selection mediated by double positive thymocytes through their recognition of natural ligands presented by CD1d, a nonpolymorphic, non-MHC, MHC-like antigen presenting molecule. Genetic evidence suggested that beta-glucosylceramide derived glycosphingolipids (GSLs) are natural ligands for NKT cells. N-butyldeoxygalactonojirimycin (NB-DGJ), a drug that specifically inhibits the glucosylceramide synthase, inhibits the endogenous ligands for NKT cells. Furthermore, we and others have found a beta-linked glycosphingolipid, isoglobotriaosylceramide (iGb3), is a stimulatory NKT ligand. The iGb3 synthase knockout mice have a normal NKT development and function, indicating that other ligands exist and remain to be identified. In this study, we have performed a glycosphingolipidomics study of mouse thymus, and studied mice mutants which are deficient in beta-hexosaminidase b or alpha-galactosidase A, two glycosidases that are up- and downstream agents of iGb3 turnover, respectively. Our mass spectrometry methods generated a first database for glycosphingolipids expressed in mouse thymus, which are specifically regulated by rate-limiting glycosidases. Among the identified thymic glycosphingolipids, only iGb3 is a stimulatory ligand for NKT cells, suggesting that large-scale fractionation, enrichment and characterization of minor species of glycosphingolipids are necessary for identifying additional ligands for NKT cells. Our results also provide early insights into cellular lipidomics studies, with a specific focus on the important immunological functions of glycosphingolipids.

Indexed as

alpha-GalactosidaseAnimalsbeta-Hexosaminidase beta ChainGalactosyltransferasesGene ExpressionGenomicsGlobosidesGlycosphingolipidsHydrogen-Ion ConcentrationLigandsMiceMice, KnockoutNatural Killer T-CellsThymus Glandalpha-Galactosidasebeta-Hexosaminidase beta ChainGalactosyltransferasesGlobosidesGlycosphingolipidsisoglobotriaosylceramideLigandsUDP-galactose beta-D-galactosyl-1,4-glycosylceramide alpha-1,3-galactosyltransferase

Identifiers

PMID19284783
PMCPMC2720133
OpenAlexW2027908113

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.