Evidence map›Paper›PMID 19279666›Full record

ArticleThe EMBO journal2009

Coordination of dual incision and repair synthesis in human nucleotide excision repair.

Lidija Staresincic, Adebanke F Fagbemi, Jacqueline H Enzlin, Audrey M Gourdin, Nils Wijgers, Isabelle Dunand-Sauthier, Giuseppina Giglia-Mari, Stuart G Clarkson, Wim Vermeulen, Orlando D Schärer

Abstract read
In one paragraph

Article in The EMBO journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 159 papers.

0numbers the graph read from it
0cells of the map it votes in
159citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

159 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. The aflatoxin BNAR cancer · 2025
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Mechanisms of DNA repair and mutagenesis induced by acetaldehyde, acrolein, aristolochic acids, and vinyl chloride.Journal of environmental science and health. Part C, Toxicology and carcinogenesis · 2025
    Review
  15. Article
  16. Review
  17. Article
  18. Photoreactivation Activities of Rad5, Rad16A and Rad16B HelpJournal of fungi (Basel, Switzerland) · 2024
    Article
  19. Article
  20. Article

99 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lidija StaresincicDepartment of Pharmacological Sciences, Stony Brook University, Stony Brook, NY 11794-3400, USA.
Adebanke F Fagbemi
Jacqueline H Enzlin
Audrey M Gourdin
Nils Wijgers
Isabelle Dunand-Sauthier
Giuseppina Giglia-Mari
Stuart G Clarkson
Wim Vermeulen
Orlando D Schärer

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Coordination of the late steps of human nucleotide excision repairR01GM080454 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SCHARER, ORLANDO D. · 2007 to 2010
$1.4M
NCI NIH HHS CA092584NCI NIH HHS P01 CA092584NIGMS NIH HHS GM080454NIGMS NIH HHS R01 GM080454
6 · The paper itself

Abstract

Nucleotide excision repair (NER) requires the coordinated sequential assembly and actions of the involved proteins at sites of DNA damage. Following damage recognition, dual incision 5' to the lesion by ERCC1-XPF and 3' to the lesion by XPG leads to the removal of a lesion-containing oligonucleotide of about 30 nucleotides. The resulting single-stranded DNA (ssDNA) gap on the undamaged strand is filled in by DNA repair synthesis. Here, we have asked how dual incision and repair synthesis are coordinated in human cells to avoid the exposure of potentially harmful ssDNA intermediates. Using catalytically inactive mutants of ERCC1-XPF and XPG, we show that the 5' incision by ERCC1-XPF precedes the 3' incision by XPG and that the initiation of repair synthesis does not require the catalytic activity of XPG. We propose that a defined order of dual incision and repair synthesis exists in human cells in the form of a 'cut-patch-cut-patch' mechanism. This mechanism may aid the smooth progression through the NER pathway and contribute to genome integrity.

Indexed as

DNA DamageDNA RepairAnimalsCatalytic DomainCell LineDNADNA-Binding ProteinsDNA Excision Repair Protein ERCC-5DNA, Single-StrandedEndonucleasesHumansNuclear ProteinsProliferating Cell Nuclear AntigenTranscription FactorsUltraviolet RaysCNOT8 protein, humanDNADNA-Binding ProteinsDNA Excision Repair Protein ERCC-5DNA, Single-StrandedEndonucleasesERCC1 protein, humanNuclear ProteinsProliferating Cell Nuclear AntigenTranscription Factorsxeroderma pigmentosum group F protein

Identifiers

PMID19279666
PMCPMC2683701

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.