Evidence map›Paper›PMID 19279098›Full record

ArticleJournal of virology2009

Selection of a simian-human immunodeficiency virus strain resistant to a vaginal microbicide in macaques.

Dawn M Dudley, Jennifer L Wentzel, Matthew S Lalonde, Ronald S Veazey, Eric J Arts

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Dawn M DudleyDepartment of Molecular Biology and Microbiology, Case Western Reserve University, 10900 Euclid Ave., Cleveland, OH 44106, USA.
Jennifer L Wentzel
Matthew S Lalonde
Ronald S Veazey
Eric J Arts
Office of Infectious Diseases · USCase Western Reserve University · USTulane University · US

Funding

WG3: HIV, Co-infections and Co-morbiditiesP30AI036219 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI Mark James Cameron · 1994 to 2026
$50.0M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007250 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI HUANG, ALEX YEE-CHEN · 1985 to 2023
$33.4M
Impact of HIV-1 Fitness on Disease ProgressionR01AI049170 · NIAID · UNIVERSITY OF WESTERN ONTARIO · PI ARTS, ERIC J · 2002 to 2024
$6.8M
ANTIGENIC PROPERTIES OF THE V1/V2 DOMAIN OF HIV-1 GP120R01AI046283 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI PINTER, ABRAHAM · 2000 to 2010
$5.1M
Antigenic properties of the V1/V2 domain of HIV-1 gp120R56AI046283 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI PINTER, ABRAHAM · 2005 to 2005
$493k
HIV-1 Fitness and RecombinationR56AI049170 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ARTS, ERIC J · 2012 to 2012
$400k
Impact of HIV-1 Fitness on Disease ProgressionR21AI049170 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI ARTS, ERIC J · 2001 to 2001
$265k
ANTIGENIC PROPERTIES OF THE V1/V2 DOMAIN OF HIV-1 GP120R21AI046283 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI PINTER, ABRAHAM · 2000 to 2000
$111k
NIAID NIH HHS AI36219NIAID NIH HHS AI436402NIAID NIH HHS AI46283NIAID NIH HHS AI49170NIAID NIH HHS P30 AI036219NIAID NIH HHS R01 AI046283NIAID NIH HHS R01 AI049170NIAID NIH HHS R21 AI046283NIAID NIH HHS R21 AI049170NIAID NIH HHS R56 AI046283NIAID NIH HHS R56 AI049170NIGMS NIH HHS T32 GM007250NIGMS NIH HHS T32 GM07250
6 · The paper itself

Abstract

PSC-RANTES binds to CCR5, inhibits human immunodeficiency virus type 1 (HIV-1) entry, and has been shown as a vaginal microbicide to protect rhesus macaques from a simian-human immunodeficiency virus chimera (SHIV(SF162-p3)) infection in a dose-dependent manner. In this study, env gene sequences from SHIV(SF162-p3)-infected rhesus macaques treated with PSC-RANTES were analyzed for possible drug escape variants. Two specific mutations located in the V3 region of gp120 (K315R) and C-helical domain of gp41 (N640D) were identified in a macaque (m584) pretreated with a 100 microM dose of PSC-RANTES. These two env mutations were found throughout infection (through week 77) but were found at only low frequencies in the inoculating SHIV(SF162-p3) stock and in the other SHIV(SF162-p3)-infected macaques. HIV-1 env genes from macaque m584 (env(m584)) and from inoculating SHIV(SF162-p3) (env(p3)) were cloned into an HIV-1 backbone. Increases in 50% inhibitory concentrations to PSC-RANTES with env(m584) were modest (sevenfold) and most pronounced in cells expressing rhesus macaque CCR5 as compared to human CCR5. Nonetheless, virus harboring env(m584), unlike inoculating virus env(p3), could replicate even at the highest tissue culture PSC-RANTES concentrations (100 nM). Dual-virus competitions revealed a dramatic increase in fitness of chimeric virus containing env(m584) (K315R/N640D) over that containing env(p3), but again, only in rhesus CCR5-expressing cells. This study is the first to describe the immediate selection and infection of a drug-resistant SHIV variant in the face of a protective vaginal microbicide, PSC-RANTES. This rhesus CCR5-specific/PSC- RANTES resistance selection is particularly alarming given the relative homogeneity of the SHIV(SF162-p3) stock compared to the potential exposure to a heterogeneous HIV-1 population in human transmission.

Indexed as

Drug Resistance, ViralAnimalsAnti-HIV AgentsCells, CulturedChemokine CCL5Disease Models, Animalenv Gene Products, Human Immunodeficiency VirusEvolution, MolecularFemaleHIV-1HIV InfectionsHumansMacaca mulattaMutationPolymorphism, GeneticRNA, ViralAnti-HIV AgentsChemokine CCL5env Gene Products, Human Immunodeficiency VirusRANTES, N(alpha)-(n-nonanoyl)-desSer(1)-(thioproline(2),cyclohexylglycine(3))-RNA, Viral

Identifiers

PMID19279098
PMCPMC2682063
OpenAlexW2120758820

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.