ArticleJournal of industrial microbiology & biotechnology2009
Morphological quantification of filamentous fungal development using membrane immobilization and automatic image analysis.
Article in Journal of industrial microbiology & biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Streamlining the isolation of fungal hyphae: a semi-automated approach for soil substrates.Journal of experimental botany · 2026Article
- An automated workflow for fungal cell counting, cell size and data analysis: enhancing throughput and accuracy with the cell analysis and counting tool using ilastik software (caactus).BMC microbiology · 2026Article
- Image-based quantification of Candida albicans filamentation and hyphal length using the open-source visual programming language JIPipe.FEMS yeast research · 2025Article
- Full identification of a growing and branching network's spatio-temporal structures.Biophysical journal · 2025Article
- TaSYP137 and TaVAMP723, the SNAREs Proteins from Wheat, Reduce Resistance toInternational journal of molecular sciences · 2023Article
- A Comprehensive Survey with Quantitative Comparison of Image Analysis Methods for Microorganism Biovolume Measurements.Archives of computational methods in engineering : state of the art reviews · 2023Article
- Computation-aided studies related to the induction of specialized metabolite biosynthesis in microbial co-cultures: An introductory overview.Computational and structural biotechnology journal · 2023Review
- Temperature-responsive regulation of the fermentation of hypocrellin A by Shiraia bambusicola (GDMCC 60438).Microbial cell factories · 2022Article
- Article
- HyLength: a semi-automated digital image analysis tool for measuring the length of roots and fungal hyphae of dense mycelia.Mycorrhiza · 2020Article
- Article
- HyphaTracker: An ImageJ toolbox for time-resolved analysis of spore germination in filamentous fungi.Scientific reports · 2018Article
- The Mycelium as a Network.Microbiology spectrum · 2017Review
Corrections and comments
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Authors and funding
3 authors.
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Abstract
Mycelial morphology is a critically important process property in industrial fermentations of filamentous micro-organisms, as particular phenotypes are associated with maximum productivity. However, the accurate quantification of complex morphologies still represents a significant challenge in elucidating this relationship. A system has been developed for high-resolution characterisation of filamentous fungal growth on a solid substrate, using membrane immobilization and fully-automatic plug-ins developed for the public domain, Java-based, image-processing software, ImageJ. The system has been used to quantify the microscopic development of Aspergillus oryzae on malt agar, by measuring spore projected area and circularity, the total length of a hyphal element, the number of tips per element, and the hyphal growth unit. Two different stages of growth are described, from the swelling of a population of conidiospores up to fully developed, branched hyphae 24 h after inoculation. Spore swelling expressed as an increase in mean equivalent spore diameter was found to be approximately linear with time. Widespread germination of spores was observed by 8 h after inoculation. From approximately 12 h, the number of tips was found to increase exponentially. The specific growth rate of a population of hyphae was calculated as approximately 0.24-0.27 h(-1). A wide variation in growth kinetics was found within the population. The robustness of the image-analysis system was verified by testing the effect of small variations in the input data.
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