Evidence map›Paper›PMID 19276110›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Generation of a nicking enzyme that stimulates site-specific gene conversion from the I-AniI LAGLIDADG homing endonuclease.

Audrey McConnell Smith, Ryo Takeuchi, Stefan Pellenz, Luther Davis, Nancy Maizels, Raymond J Monnat, Barry L Stoddard

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 117 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Review
  13. Article
  14. Assaying Repair at DNA Nicks.Methods in enzymology · 2018
    Article
  15. Article
  16. Genome editing: a robust technology for human stem cells.Cellular and molecular life sciences : CMLS · 2017
    Review
  17. Article
  18. Genome-Editing Technologies: Principles and Applications.Cold Spring Harbor perspectives in biology · 2016
    Review
  19. Article
  20. Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Audrey McConnell SmithDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, 1100 Fairview Avenue, North Seattle, WA 98109, USA.
Ryo Takeuchi
Stefan Pellenz
Luther Davis
Nancy Maizels
Raymond J Monnat
Barry L Stoddard
Human Genome Sciences (United States) · USNorth Seattle College · USUniversity of Washington Medical Center · USFred Hutch Cancer Center · US

Funding

Structure, function &engineering of nuclease catalystsR01GM049857 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STODDARD, BARRY L. · 1994 to 2014
$4.2M
Structural and Biophysical Characterization of Engineered Homing Endonucleases (CRL1CA133833 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI STODDARD, BARRY L. · 2007 to 2011
$2.1M
Targeted Gene Repair by Homologous Recombination (Component 8 of 11)RL1GM084434 · NIGMS · UNIVERSITY OF WASHINGTON · PI MAIZELS, NANCY · 2007 to 2011
$2.0M
NEW LAGLIDADG HOMING ENDONUCLEASES FOR GENOME ENGINEERING (Component 2 of 11)RL1CA133831 · NCI · UNIVERSITY OF WASHINGTON · PI MONNAT, RAYMOND J · 2007 to 2011
$1.9M
NCI NIH HHS 1RL1CA133831NCI NIH HHS RL1 CA133831NCI NIH HHS RL1 CA133833NIGMS NIH HHS R01 GM049857NIGMS NIH HHS R01 GM49857NIGMS NIH HHS RL1 GM084434
6 · The paper itself

Abstract

Homing endonucleases stimulate gene conversion by generating site-specific DNA double-strand breaks that are repaired by homologous recombination. These enzymes are potentially valuable tools for targeted gene correction and genome engineering. We have engineered a variant of the I-AniI homing endonuclease that nicks its cognate target site. This variant contains a mutation of a basic residue essential for proton transfer and solvent activation in one active site. The cleavage mechanism, DNA-binding affinity, and substrate specificity profile of the nickase are similar to the wild-type enzyme. I-AniI nickase stimulates targeted gene correction in human cells, in cis and in trans, at approximately 1/4 the efficiency of the wild-type enzyme. The development of sequence-specific nicking enzymes like the I-AniI nickase will facilitate comparative analyses of DNA repair and mutagenesis induced by single- or double-strand breaks.

Indexed as

Base SequenceCatalytic DomainDeoxyribonuclease IDNA CleavageDNA RepairEndonucleasesHumansMutagenesisMutationProtein EngineeringRNA-Directed DNA PolymeraseSubstrate SpecificityDeoxyribonuclease IEndonucleasesmaturase I-AniIRNA-Directed DNA Polymerase

Identifiers

PMID19276110
PMCPMC2664052
OpenAlexW2119693564

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.