Evidence map›Paper›PMID 19275880›Full record

ArticleBiochemical and biophysical research communications2009

NF-kappaB and ZBP-89 regulate MMP-3 expression via a polymorphic site in the promoter.

Ruth C Borghaei, Grzegorz Gorski, Masoud Javadi, Mariah Chambers

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ruth C BorghaeiDept. of Biochemistry and Molecular Biology, Philadelphia College of Osteopathic Medicine, Philadelphia, PA 19131, USA. ruthb@pcom.edu
Grzegorz Gorski
Masoud Javadi
Mariah Chambers
Philadelphia College of Osteopathic Medicine · US

Funding

Transcriptional Regulation of Matrix Metalloproteinase-3 (MMP-3)R15DE016277 · NIDCR · PHILADELPHIA COLLEGE OF OSTEOPATHIC MED · PI BORGHAEI, RUTH C · 2004 to 2007
$472k
NIDCR NIH HHS R15 DE016277NIDCR NIH HHS R15DE016277
6 · The paper itself

Abstract

A 5T/6T polymorphism in the human MMP-3 promoter affects gene expression and impacts the risk and/or severity of various pathological conditions. Chromatin immunoprecipitation (ChIP) in human fibroblasts homozygous for the 6T site demonstrate that it is bound by NF-kappaB and ZBP-89 transcription factors in its native chromatin. ChIP in COS-1 cells transfected with plasmids containing the 5T and 6T sites in the context of 2kb of the MMP-3 promoter showed that NF-kappaB p50 binds preferentially to the 6T site, while more ZBP-89 binding is detected to the 5T site. Over-expressed ZBP-89 increased transcription from the 5T promoter but not from the 6T, while NF-kappaB decreased transcription from both promoters, even in the presence of excess ZBP-89. A model is suggested in which the physiological impact of the polymorphism is dependent on the relative levels and activities of these competing factors in various cell types and conditions.

Indexed as

Gene Expression RegulationAnimalsChlorocebus aethiopsCOS CellsDNA-Binding ProteinsHumansMatrix Metalloproteinase 3NF-kappa BPolymorphism, GeneticPromoter Regions, GeneticTranscription FactorsTranscription, GeneticDNA-Binding ProteinsMatrix Metalloproteinase 3NF-kappa BTranscription FactorsZNF148 protein, human

Identifiers

PMID19275880
PMCPMC2678966
OpenAlexW2076833694

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.