Evidence map›Paper›PMID 19273594›Full record

ArticleMolecular and cellular biology2009

The WD40 repeat protein WDR-23 functions with the CUL4/DDB1 ubiquitin ligase to regulate nuclear abundance and activity of SKN-1 in Caenorhabditis elegans.

Keith P Choe, Aaron J Przybysz, Kevin Strange

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed, 191 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. LIN-23 AffectsbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. The Ancestral KEAP1-NRF Pathway in AmphioxusInternational journal of molecular sciences · 2025
    Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Chemical Genetics inACS chemical biology · 2024
    Article

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Keith P ChoeDepartment of Molecular Physiology and Biophysics, Vanderbilt University Medical Center, Nashville, TN 37232-2520, USA. keith.p.choe@vanderbilt.edu
Aaron J Przybysz
Kevin Strange
Vanderbilt University Medical Center · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Vanderbilt Diabetes Research CenterP30DK020593 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI OWEN P MCGUINNESS · 2012 to 2026
$29.3M
TRANSGENIC MOUSE/ ES CELL SHARES RESOURCESP60DK020593 · NIDDK · VANDERBILT UNIVERSITY · PI MCGUINNESS, OWEN P · 1986 to 2011
$28.1M
Shop Module CoreP30EY008126 · NEI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Kevin L Schey · 1989 to 2026
$19.6M
THREE-TIERED PREVENTION MODEL TO BETTER SERVE ALL STUDENP30HD015052 · NICHD · VANDERBILT UNIVERSITY · PI DYKENS, ELISABETH MAY · 1985 to 2014
$18.6M
Vanderbilt Mouse Metabolic Physiology CenterU24DK059637 · NIDDK · VANDERBILT UNIVERSITY · PI WASSERMAN, DAVID H · 2001 to 2015
$14.9M
TRAINING IN PHARMACOLOGICAL SCIENCEST32GM007628 · NIGMS · VANDERBILT UNIVERSITY · PI BARNETT, JOEY VICTOR, KAVALALI, EGE T · 1985 to 2022
$11.2M
Structural Identification of Prostaglandin ConjugatesR37GM042056 · NIGMS · VANDERBILT UNIVERSITY · PI ROBERTS, II, L JACKSON · 2001 to 2010
$6.5M
Vanderbilt Mouse Metabolic Phenotyping CenterU2CDK059637 · NIDDK · VANDERBILT UNIVERSITY · PI WASSERMAN, DAVID H · 2016 to 2021
$6.3M
Regulation of a C. elegans CIC channel by phosphorylation and membrane retrievalR01DK061168 · NIDDK · VANDERBILT UNIVERSITY · PI STRANGE, KEVIN · 2001 to 2013
$4.1M
STRUCTURAL IDENTIFICATION OF PROSTAGLANDIN CONJUGATESR01GM042056 · NIGMS · VANDERBILT UNIVERSITY · PI ROBERTS, L JACKSON · 1989 to 2000
$441k
NCI NIH HHS CA68485NCI NIH HHS P30 CA068485NEI NIH HHS EY08126NEI NIH HHS P30 EY008126NICHD NIH HHS HD15052NICHD NIH HHS P30 HD015052NIDDK NIH HHS DK20593NIDDK NIH HHS DK58404NIDDK NIH HHS DK59637NIDDK NIH HHS P30 DK020593NIDDK NIH HHS P30 DK058404NIDDK NIH HHS R01 DK061168NIDDK NIH HHS R01 DK61168NIDDK NIH HHS U24 DK059637NIGMS NIH HHS F32 GM077904NIGMS NIH HHS GM077904NIGMS NIH HHS R01 GM042056NIGMS NIH HHS R01 GM42056NIGMS NIH HHS R37 GM042056NIGMS NIH HHS T32 GM007628NIGMS NIH HHS T32 GM07628
6 · The paper itself

Abstract

The transcription factor SKN-1 protects Caenorhabditis elegans from stress and promotes longevity. SKN-1 is regulated by diverse signals that control metabolism, development, and stress responses, but the mechanisms of regulation and signal integration are unknown. We screened the C. elegans genome for regulators of cytoprotective gene expression and identified a new SKN-1 regulatory pathway. SKN-1 protein levels, nuclear accumulation, and activity are repressed by the WD40 repeat protein WDR-23, which interacts with the CUL-4/DDB-1 ubiquitin ligase to presumably target the transcription factor for proteasomal degradation. WDR-23 regulates SKN-1 target genes downstream from p38 mitogen-activated protein kinase, glycogen synthase kinase 3, and insulin-like receptor pathways, suggesting that phosphorylation of SKN-1 may function to modify its interaction with WDR-23 and/or CUL-4/DDB-1. These findings define the mechanism of SKN-1 accumulation in the cell nucleus and provide a new mechanistic framework for understanding how phosphorylation signals are integrated to regulate stress resistance and longevity.

Indexed as

Repetitive Sequences, Amino AcidAmino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell NucleusCullin ProteinsDNA-Binding ProteinsForkhead Transcription FactorsGene Expression RegulationGlutathione TransferaseHumansIsoenzymesMAP Kinase Kinase 4Molecular Sequence DataPhylogenyCaenorhabditis elegans ProteinsCullin Proteinsdaf-16 protein, C elegansDAF-2 protein, C elegansDDB-1 protein, C elegansDNA-Binding ProteinsForkhead Transcription FactorsGlutathione TransferaseIsoenzymesMAP Kinase Kinase 4Proteasome Endopeptidase ComplexReceptor, InsulinRecombinant Fusion ProteinsRepressor Proteinssek-1 protein, C elegansskn-1 protein, C elegansTranscription FactorsWDR-23 protein, C elegans

Identifiers

PMID19273594
PMCPMC2682033
OpenAlexW2143662151

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.