Evidence map›Paper›PMID 19270708›Full record

ArticleNature genetics2009

Validation of candidate causal genes for obesity that affect shared metabolic pathways and networks.

Xia Yang, Joshua L Deignan, Hongxiu Qi, Jun Zhu, Su Qian, Judy Zhong, Gevork Torosyan, Sana Majid, Brie Falkard, Robert R Kleinhanz and 22 more

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 281 citations in OpenAlex.

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  18. Integrative metabolomics-genomics approach reveals key metabolic pathways and regulators of Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2022
    Article
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  20. Article

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 2 institutions in 1 country.

Xia YangDepartment of Medicine, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Joshua L Deignan
Hongxiu Qi
Jun Zhu
Su Qian
Judy Zhong
Gevork Torosyan
Sana Majid
Brie Falkard
Robert R Kleinhanz
Jenny Karlsson
Lawrence W Castellani
Sheena Mumick
Kai Wang
Tao Xie
Michael Coon
Chunsheng Zhang
Daria Estrada-Smith
Charles R Farber
Susanna S Wang
Atila van Nas
Anatole Ghazalpour
Bin Zhang
Douglas J Macneil
John R Lamb
Katrina M Dipple
Marc L Reitman
Margarete Mehrabian
Pek Y Lum
Eric E Schadt
Aldons J Lusis
Thomas A Drake
University of California, Los Angeles · USMerck & Co., Inc., Rahway, NJ, USA (United States) · US

Funding

ULTRASTRUCTURE OF THE INTIMA IN EARLY LESION FORMATIONP01HL030568 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FOGELMAN, ALAN M · 1985 to 2019
$55.2M
Systems genomics of metabolic syndrome traitsP01HL028481 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REUE, KAREN · 1985 to 2019
$50.2M
Gene expression networks for metabolic syndrome traits in miceR01DK072206 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DRAKE, THOMAS A · 2006 to 2010
$1.5M
NHLBI NIH HHS HL28481NHLBI NIH HHS HL30568NHLBI NIH HHS P01 HL028481NHLBI NIH HHS P01 HL030568NIDDK NIH HHS DK072206NIDDK NIH HHS R01 DK072206
6 · The paper itself

Abstract

A principal task in dissecting the genetics of complex traits is to identify causal genes for disease phenotypes. We previously developed a method to infer causal relationships among genes through the integration of DNA variation, gene transcription and phenotypic information. Here we have validated our method through the characterization of transgenic and knockout mouse models of genes predicted to be causal for abdominal obesity. Perturbation of eight out of the nine genes, with Gas7, Me1 and Gpx3 being newly confirmed, resulted in significant changes in obesity-related traits. Liver expression signatures revealed alterations in common metabolic pathways and networks contributing to abdominal obesity and overlapped with a macrophage-enriched metabolic network module that is highly associated with metabolic traits in mice and humans. Integration of gene expression in the design and analysis of traditional F(2) intercross studies allows high-confidence prediction of causal genes and identification of pathways and networks involved.

Indexed as

AbdomenAdipose TissueAnimalsCarrier ProteinsDisease Models, AnimalFemaleGene Expression ProfilingGenetic VariationGlutathione PeroxidaseGlycoproteinsHumansLiverMaleMiceMice, KnockoutMice, TransgenicCarrier ProteinsGAS7 protein, humanGlutathione PeroxidaseGlycoproteinsGPX3 protein, humanNerve Tissue ProteinsNPC2 protein, humanVesicular Transport Proteins

Identifiers

PMID19270708
PMCPMC2837947
OpenAlexW2168312688

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.