Evidence map›Paper›PMID 19270142›Full record

ArticleApplied and environmental microbiology2009

Biosynthesis of sibiromycin, a potent antitumor antibiotic.

Wei Li, Ankush Khullar, Shenchieh Chou, Ashley Sacramo, Barbara Gerratana

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 128 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Wei LiDepartment of Chemistry and Biochemistry, Bldg. 091, University of Maryland, College Park, MD 20742, USA.
Ankush Khullar
Shenchieh Chou
Ashley Sacramo
Barbara Gerratana
University of Maryland, College Park · US

Funding

Biosynthesis of Pyrrolo[1,4]benzodiazepines, potent antitumor antibioticsR01GM084473 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI ROKITA, STEVEN E · 2008 to 2012
$1.4M
NIGMS NIH HHS GM084473NIGMS NIH HHS R01 GM084473
6 · The paper itself

Abstract

Pyrrolobenzodiazepines, a class of natural products produced by actinomycetes, are sequence selective DNA alkylating compounds with significant antitumor properties. Among the pyrrolo[1,4]benzodiazepines (PBDs) sibiromycin, one of two identified glycosylated PBDs, displays the highest affinity for DNA and the most potent antitumor properties. Despite the promising antitumor properties clinical trials of sibiromycin were precluded by the cardiotoxicity effect in animals attributed to the presence of the C-9 hydroxyl group. As a first step toward the development of sibiromycin analogs, we have cloned and localized the sibiromycin gene cluster to a 32.7-kb contiguous DNA region. Cluster boundaries tentatively assigned by comparative genomics were verified by gene replacement experiments. The sibiromycin gene cluster consisting of 26 open reading frames reveals a "modular" strategy in which the synthesis of the anthranilic and dihydropyrrole moieties is completed before assembly by the nonribosomal peptide synthetase enzymes. In addition, the gene cluster identified includes open reading frames encoding enzymes involved in sibirosamine biosynthesis, as well as regulatory and resistance proteins. Gene replacement and chemical complementation studies are reported to support the proposed biosynthetic pathway.

Indexed as

ActinobacteriaAminoglycosidesAntibiotics, AntineoplasticBiosynthetic PathwaysChromatography, High Pressure LiquidDNA, BacterialGene DeletionGene OrderGenes, BacterialMolecular Sequence DataMolecular StructureMultigene FamilySequence Analysis, DNAAminoglycosidesAntibiotics, AntineoplasticDNA, Bacterialsibiromycin

Identifiers

PMID19270142
PMCPMC2681668
OpenAlexW2115802902

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.